Tableau information
Concept source: d3ryka_ amino acid (a.a.) range (GLN97)(ASN149)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN97) (ILE102) E1
(HIS108) (PRO114) E2
(PHE117) (THR123) E3
(HIS127) (LYS133) E4
(ASP143) (ASN149) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -161.1° E2
E3 -32.1° -153.1° E3
E4 127.3° -45.4° 159.4° E4
E5 -83.0° 113.6° -56.4° 137.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1znpc_ : (GLU83) (GLU137) [view usage] : b.82.1.16 |Double-stranded beta-helix |RmlC-like cupins |YML079-like |Hypothetical protein Atu3615 |Agrobacterium tumefaciens [TaxId: 358]
d1qwrb_ : (LEU154) (VAL194) [view usage] : b.82.1.3 |Double-stranded beta-helix |RmlC-like cupins |Type I phosphomannose isomerase |Mannose-6-phosphate isomerase ManA |Bacillus subtilis [TaxId: 1423]
d1dzra_ : (GLN98) (LEU148) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Salmonella typhimurium [TaxId: 90371]
d1wlta1 : (LYS96) (SER146) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Sulfolobus tokodaii [TaxId: 111955]
d2extb_ : (HIS33) (SER72) [view usage] : b.82.5.1 |Double-stranded beta-helix |TRAP-like |Trp RNA-binding attenuation protein (TRAP) |Trp RNA-binding attenuation protein (TRAP) |Bacillus stearothermophilus [TaxId: 1422]
d1caub_ : (GLN332) (ALA380) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]
d1nxma_ : (ASN107) (ASN158) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Streptococcus suis [TaxId: 1307]
d1znpa1 : (GLU83) (GLU137) [view usage] : b.82.1.16 |Double-stranded beta-helix |RmlC-like cupins |YML079-like |Hypothetical protein Atu3615 |Agrobacterium tumefaciens [TaxId: 358]
d2c0za1 : (CYS97) (HIS147) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |Novobiocin biosynthesis protein NovW |Streptomyces caeruleus [TaxId: 195949]
d1znpe_ : (GLU83) (GLU137) [view usage] : b.82.1.16 |Double-stranded beta-helix |RmlC-like cupins |YML079-like |Hypothetical protein Atu3615 |Agrobacterium tumefaciens [TaxId: 358]
d1rtva_ : (TRP97) (VAL146) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Pseudomonas aeruginosa [TaxId: 287]
d3ryka_ : (GLN97) (ASN149) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d1ep0a_ : (GLY97) (PRO148) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1znpb_ : (GLU83) (GLU137) [view usage] : b.82.1.16 |Double-stranded beta-helix |RmlC-like cupins |YML079-like |Hypothetical protein Atu3615 |Agrobacterium tumefaciens [TaxId: 358]
d1suwa_ : (PHE184) (LYS224) [view usage] : e.52.1.1 |NAD kinase/diacylglycerol kinase-like |NAD kinase/diacylglycerol kinase-like |NAD kinase-like |Inorganic polyphosphate/ATP-NAD kinase PpnK |Archaeoglobus fulgidus [TaxId: 2234]
d2ixlc_ : (ASN107) (ASN158) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Streptococcus suis [TaxId: 1307]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, e.52