Tableau information
Concept source: d1xs0c_ amino acid (a.a.) range (THR37)(TRP96)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR37) (GLY47) E1
(ASP48) (LYS58) E2
(SER64) (MET70) E3
(ASN76) (ASP86) E4
(SER90) (TRP96) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 158.2° E2
E3 -39.7° 160.5° E3
E4 125.6° -34.8° 164.7° E4
E5 -56.4° 137.0° -27.3° 160.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1g5wa_ : (GLY67) (HIS119) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Muscle fatty acid binding protein (m-fabp) |Human (Homo sapiens) [TaxId: 9606]
d1qsca1 : (PRO374) (ARG448) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 2 (TRAF2) |Human (Homo sapiens) [TaxId: 9606]
d4c9zb_ : (ILE155) (GLY213) [view usage] : b.8.1.2 |TRAF domain-like |TRAF domain-like |SIAH, seven in absentia homolog |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k2fa_ : (THR156) (ILE212) [view usage] : b.8.1.2 |TRAF domain-like |TRAF domain-like |SIAH, seven in absentia homolog |SIAH, seven in absentia homolog |Mouse (Mus musculus) [TaxId: 10090]
d1kita2 : (PHE357) (SER410) [view usage] : b.29.1.8 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Vibrio cholerae sialidase, N-terminal and insertion domains |Vibrio cholerae sialidase, N-terminal and insertion domains |Vibrio cholerae [TaxId: 666]
d2qm9b_ : (LYS81) (ARG130) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Adipocyte lipid-binding protein, ALBP |Mouse (Mus musculus) [TaxId: 10090]
d1d7ca_ : (PHE44) (THR104) [view usage] : b.1.9.1 |Immunoglobulin-like beta-sandwich |CBD9-like |Cytochrome domain of cellobiose dehydrogenase |Cytochrome domain of cellobiose dehydrogenase |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d1tg7a3 : (GLY891) (PRO952) [view usage] : b.18.1.27 |Galactose-binding domain-like |Galactose-binding domain-like |Beta-galactosidase LacA, domains 4 and 5 |Beta-galactosidase LacA, domains 4 and 5 |Penicillium sp. [TaxId: 5081]
d1eala_ : (GLY76) (ALA127) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Ileal lipid-binding protein |Pig (Sus scrofa) [TaxId: 9823]
d1q4kc1 : (GLY422) (TYR462) [view usage] : d.223.1.2 |Polo-box domain |Polo-box domain |Polo-box duplicated region |Serine/threonine-protein kinase plk C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1go7p1 : (GLN424) (VAL469) [view usage] : b.80.7.1 |Single-stranded right-handed beta-helix |beta-Roll |Serralysin-like metalloprotease, C-terminal domain |Metalloprotease |Erwinia chrysanthemi [TaxId: 556]
d1toua_ : (LYS81) (ARG130) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Adipocyte lipid-binding protein, ALBP |Human (Homo sapiens) [TaxId: 9606]
d1jjua5 : (GLY219) (LYS271) [view usage] : b.61.4.1 |Streptavidin-like |Quinohemoprotein amine dehydrogenase A chain, domain 3 |Quinohemoprotein amine dehydrogenase A chain, domain 3 |Quinohemoprotein amine dehydrogenase A chain, domain 3 |Paracoccus denitrificans [TaxId: 266]
d4k8uc_ : (ASN329) (HIS409) [view usage] : b.8.1.0 |TRAF domain-like |TRAF domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g0da3 : (GLY618) (LYS684) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Red sea bream (Chrysophrys major) [TaxId: 143350]
d1kqwa_ : (LYS83) (LYS131) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein II (CRBP) |Zebrafish (Danio rerio) [TaxId: 7955]
d1qabe_ : (ASN40) (ASP102) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Human (Homo sapiens) [TaxId: 9606]
d2a6wb_ : (ASP67) (LEU151) [view usage] : b.29.1.13 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Lectin leg-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1y4wa1 : (ASN398) (ARG450) [view usage] : b.29.1.19 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 32 C-terminal domain |Exo-inulinase |Aspergillus awamori [TaxId: 105351]
d3wjba_ : (PRO42) (VAL110) [view usage] : b.60.1.8 |Lipocalins |Lipocalins |Rv2717c-like |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1kzxa_ : (GLY75) (LYS130) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Intestinal fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d4efga_ : (ASN79) (VAL129) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4gjhc_ : (VAL374) (LYS449) [view usage] : b.8.1.0 |TRAF domain-like |TRAF domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1ohza_ : (GLY53) (ILE116) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cohesin domain |Clostridium thermocellum, cellulosome, various modules [TaxId: 1515]
d1pl3a_ : (VAL25) (THR84) [view usage] : b.1.9.1 |Immunoglobulin-like beta-sandwich |CBD9-like |Cytochrome domain of cellobiose dehydrogenase |Cytochrome domain of cellobiose dehydrogenase |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d1cura_ : (HIS39) (LYS116) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Rusticyanin |Thiobacillus ferrooxidans [TaxId: 920]
d1ab0a_ : (LYS81) (ARG130) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Adipocyte lipid-binding protein, ALBP |Mouse (Mus musculus) [TaxId: 10090]
d1d7ba_ : (PHE44) (THR104) [view usage] : b.1.9.1 |Immunoglobulin-like beta-sandwich |CBD9-like |Cytochrome domain of cellobiose dehydrogenase |Cytochrome domain of cellobiose dehydrogenase |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d3bu7a1 : (LEU257) (GLY310) [view usage] : b.82.1.23 |Double-stranded beta-helix |RmlC-like cupins |Gentisate 1,2-dioxygenase-like |Gentisate 1,2-dioxygenase |Silicibacter pomeroyi [TaxId: 89184]
d3og2a5 : (GLY903) (PRO964) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d1hxta_ : (ALA211) (VAL292) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Escherichia coli, different sequences [TaxId: 562]
d1nsxb_ : (THR108) (GLY169) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d3srxb_ : (GLY42) (ASP90) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1oh1a_ : (ASP52) (ILE106) [view usage] : b.61.2.2 |Streptavidin-like |beta-Barrel protease inhibitors |Staphostatin |Staphostatin A (SAV1910, SA1726) |Staphylococcus aureus [TaxId: 1280]
d2wgqb4 : (ASN315) (MET357) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Escherichia coli [TaxId: 562]
d4nnsa_ : (GLY67) (MET119) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Adipocyte lipid-binding protein, ALBP |Human (Homo sapiens) [TaxId: 9606]
d1gpqa_ : (GLN42) (THR95) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Escherichia coli [TaxId: 562]
d1znpe_ : (GLY23) (ASP80) [view usage] : b.82.1.16 |Double-stranded beta-helix |RmlC-like cupins |YML079-like |Hypothetical protein Atu3615 |Agrobacterium tumefaciens [TaxId: 358]
d4m7ma_ : (LYS82) (ARG136) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d4i3bb_ : (GLY85) (ARG135) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Eel (Anguilla japonica) [TaxId: 7937]
d1ca4a1 : (PRO374) (ARG448) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 2 (TRAF2) |Human (Homo sapiens) [TaxId: 9606]
d2lbaa_ : (LYS78) (SER123) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1czya1 : (PRO374) (ARG448) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 2 (TRAF2) |Human (Homo sapiens) [TaxId: 9606]
d1lpja_ : (LYS83) (PHE130) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein IV |Human (Homo sapiens) [TaxId: 9606]
d1sa8a_ : (GLY50) (LYS105) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Intestinal fatty acid binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1jbha_ : (MET83) (HIS134) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein II (CRBP) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1f1sa3 : (GLU912) (LYS953) [view usage] : b.24.1.1 |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase |Streptococcus agalactiae [TaxId: 1311]
d2q8oa1 : (PHE109) (PHE171) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Glucocorticoid-induced TNF-related ligand, TNFSF18 |Mouse (Mus musculus) [TaxId: 10090]
d2ju3a_ : (VAL38) (LYS80) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2ju3a_ : (LYS80) (VAL123) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2ccla_ : (GLY5) (TYR74) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |automated matches |Clostridium thermocellum [TaxId: 1515]
d1hu9a2 : (GLY74) (SER147) [view usage] : b.12.1.1 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipoxigenase N-terminal domain |Plant lipoxigenase |Soybean (Glycine max), isozyme L3 [TaxId: 3847]
d1xs0c_ : (THR37) (TRP96) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Escherichia coli [TaxId: 562]
d1anua_ : (GLY48) (ILE111) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cohesin domain |Clostridium thermocellum, cellulosome, various modules [TaxId: 1515]
d2a6xb_ : (ASP67) (LEU151) [view usage] : b.29.1.13 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Lectin leg-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4gjhb_ : (VAL374) (LYS449) [view usage] : b.8.1.0 |TRAF domain-like |TRAF domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1gpqb_ : (GLN42) (TRP96) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Escherichia coli [TaxId: 562]
d1bm5a_ : (LYS82) (VAL133) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d1blra_ : (ARG79) (ARG136) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d4gjha_ : (VAL374) (LYS449) [view usage] : b.8.1.0 |TRAF domain-like |TRAF domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1txka1 : (PRO444) (PRO508) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Glucans biosynthesis protein G (MdoG, OpgG), C-terminal domain |Escherichia coli [TaxId: 562]
d1xs0a_ : (THR37) (ASN98) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, b.82, b.29, b.30, d.157, f.4, b.60, b.18, b.2, b.6, b.1, b.22, b.61, d.223, b.24, b.12, b.8, d.233