Tableau information
Concept source: d3mcka1 amino acid (a.a.) range (SER48)(LEU111)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER48) (ILE53) E1
(ARG66) (SER72) E2
(THR74) (ILE80) E3
(GLY89) (SER97) E4
(LEU101) (LEU111) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -66.4° E2
E3 106.4° 171.6° E3
E4 -63.8° -36.2° 145.8° E4
E5 97.4° 139.7° -34.3° 161.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3sz6a_ : (GLN94) (PHE146) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1wj2a_ : (ARG413) (GLY461) [view usage] : g.79.1.1 |WRKY DNA-binding domain |WRKY DNA-binding domain |WRKY DNA-binding domain |WRKY DNA-binding protein 4 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3dmcb_ : (GLY73) (PHE126) [view usage] : d.17.4.10 |Cystatin-like |NTF2-like |PhzA/PhzB-like |Uncharacterized protein Ava2261 |Anabaena variabilis [TaxId: 1172]
d2v9ta_ : (GLU106) (VAL165) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2rika3 : (LYS226) (LYS279) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1v27a_ : (SER5) (THR62) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Regulating synaptic membrane exocytosis protein, rim2 |Human (Homo sapiens) [TaxId: 9606]
d2lexa_ : (TYR412) (GLY461) [view usage] : g.79.1.1 |WRKY DNA-binding domain |WRKY DNA-binding domain |WRKY DNA-binding domain |WRKY DNA-binding protein 4 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2tbvc_ : (ALA331) (VAL376) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Tombusvirus coat protein |TBSV (Tomato bushy stunt virus) [TaxId: 12145]
d2d4rc_ : (LYS58) (PRO113) [view usage] : d.129.3.6 |TBP-like |Bet v1-like |oligoketide cyclase/dehydrase-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1xfda1 : (ASP484) (SER529) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2edqa_ : (HIS44) (ARG93) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tzqa_ : (SER54) (VAL106) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Equinatoxin II (eqtII, tenebrosin C) |European sea anemone (Actinia equina) [TaxId: 6106]
d1iaza_ : (SER54) (VAL106) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Equinatoxin II (eqtII, tenebrosin C) |European sea anemone (Actinia equina) [TaxId: 6106]
d2p12a1 : (PHE29) (ILE71) [view usage] : b.175.1.1 |FomD barrel-like |FomD-like |FomD-like |Hypothetical protein RHA1_ro00977 |Rhodococcus sp. RHA1 [TaxId: 101510]
d4mc7a_ : (GLU330) (LEU380) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d1ui7a1 : (GLY341) (THR403) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Arthrobacter globiformis [TaxId: 1665]
d1buqa_ : (PRO62) (PHE116) [view usage] : d.17.4.3 |Cystatin-like |NTF2-like |Ketosteroid isomerase-like |Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI |Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]
d1jjua5 : (ALA170) (GLY219) [view usage] : b.61.4.1 |Streptavidin-like |Quinohemoprotein amine dehydrogenase A chain, domain 3 |Quinohemoprotein amine dehydrogenase A chain, domain 3 |Quinohemoprotein amine dehydrogenase A chain, domain 3 |Paracoccus denitrificans [TaxId: 266]
d2tbva_ : (ALA331) (VAL376) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Tombusvirus coat protein |TBSV (Tomato bushy stunt virus) [TaxId: 12145]
d2q03b_ : (LYS6) (GLY74) [view usage] : b.159.2.1 |AOC barrel-like |SO1590-like |SO1590-like |Uncharacterized protein Sden_2034 |Shewanella denitrificans [TaxId: 192073]
d1avka1 : (GLY341) (THR403) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Arthrobacter globiformis [TaxId: 1665]
d2crya1 : (GLU52) (GLU111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Kin of IRRE-like protein 3, KIRREL3 |Human (Homo sapiens) [TaxId: 9606]
d2bfvl_ : (SER48) (ILE111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
d3ec9a1 : (TYR75) (THR128) [view usage] : d.17.4.10 |Cystatin-like |NTF2-like |PhzA/PhzB-like |Uncharacterized protein BTHI0051 |Burkholderia thailandensis [TaxId: 57975]
d3j39a_ : (THR111) (PRO159) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3dmca1 : (GLY73) (PHE126) [view usage] : d.17.4.10 |Cystatin-like |NTF2-like |PhzA/PhzB-like |Uncharacterized protein Ava2261 |Anabaena variabilis [TaxId: 1172]
d2ebsb1 : (ALA231) (PRO277) [view usage] : b.69.13.1 |7-bladed beta-propeller |Oligoxyloglucan reducing end-specific cellobiohydrolase |Oligoxyloglucan reducing end-specific cellobiohydrolase |automated matches |Geotrichum sp. [TaxId: 203496]
d3b7ca1 : (GLU66) (ASP121) [view usage] : d.17.4.16 |Cystatin-like |NTF2-like |SO0125-like |Uncharacterized protein SO0125 |Shewanella oneidensis [TaxId: 70863]
d1we5a2 : (GLY13) (ILE69) [view usage] : b.30.5.11 |Supersandwich |Galactose mutarotase-like |YicI N-terminal domain-like |Putative glucosidase YicI, N-terminal domain |Escherichia coli [TaxId: 562]
d4lzia3 : (HIS225) (GLY281) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Potato (Solanum tuberosum) [TaxId: 4113]
d4lzia2 : (HIS131) (GLU182) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Potato (Solanum tuberosum) [TaxId: 4113]
d2cw9a1 : (GLY362) (SER447) [view usage] : d.17.4.13 |Cystatin-like |NTF2-like |TIM44-like |Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3ia8a_ : (MSE67) (SER110) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2edwa_ : (GLU45) (LEU95) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2q03a1 : (LYS6) (GLY74) [view usage] : b.159.2.1 |AOC barrel-like |SO1590-like |SO1590-like |Uncharacterized protein Sden_2034 |Shewanella denitrificans [TaxId: 192073]
d1g0yr2 : (LYS148) (THR200) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Type-1 interleukin-1 receptor |Human (Homo sapiens) [TaxId: 9606]
d3qnfa1 : (TYR57) (GLY110) [view usage] : b.98.1.0 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nbfa_ : (PRO445) (ARG487) [view usage] : d.3.1.9 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase, UCH |Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) |Human (Homo sapiens) [TaxId: 9606]
d1eaza_ : (ILE193) (PRO236) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Tapp1 |Human (Homo sapiens) [TaxId: 9606]
d1wuba_ : (ILE80) (ARG139) [view usage] : b.61.6.1 |Streptavidin-like |YceI-like |YceI-like |Polyisoprenoid-binding protein TTHA0802 (TT1927B) |Thermus thermophilus [TaxId: 274]
d3g9wa2 : (GLY312) (PRO355) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2dl9a_ : (GLY44) (SER98) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bfvl_ : (SER48) (ILE111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
d1ny4a_ : (GLU5) (ARG58) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S28e |Pyrococcus horikoshii [TaxId: 53953]
d3ec9b_ : (TYR75) (THR128) [view usage] : d.17.4.10 |Cystatin-like |NTF2-like |PhzA/PhzB-like |Uncharacterized protein BTHI0051 |Burkholderia thailandensis [TaxId: 57975]
d2v9ra1 : (GLU106) (VAL165) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1stfi_ : (PRO43) (ASN115) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin B (stefin B) |Human (Homo sapiens) [TaxId: 9606]
d2k5ga1 : (ARG84) (ARG135) [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |Uncharacterized protein BPP1335 |Bordetella parapertussis [TaxId: 519]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.70, b.69, i.1, b.30, d.129, b.40, b.60, b.121, d.3, b.1, d.17, b.55, b.61, b.97, b.7, b.98, b.159, g.79, b.175