Tableau information
Concept source: d2a5ca_ amino acid (a.a.) range (GLY8)(TRP70)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY8) (ASN12) E1
(SER16) (ALA22) E2
(GLY27) (ALA36) E3
(GLU43) (ASN57) E4
(THR60) (TRP70) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 157.8° E2
E3 -42.8° 159.2° E3
E4 112.9° -47.4° 151.3° E4
E5 -73.4° 116.7° -53.8° 146.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2lfoa_ : (ILE34) (LEU84) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Chicken (Gallus gallus) [TaxId: 9031]
d3o2ma_ : (ASN9) (LYS56) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2aena_ : (ASP79) (ASN129) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Rotavirus a [TaxId: 10941]
d1jv4a_ : (GLU43) (PRO93) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Mouse (Mus musculus) [TaxId: 10090]
d2g9fa1 : (PHE545) (ASN601) [view usage] : b.18.1.29 |Galactose-binding domain-like |Galactose-binding domain-like |Extended PAW domain |Peptide:N-glycanase, PNGase, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1avgi_ : (VAL65) (THR130) [view usage] : b.60.1.3 |Lipocalins |Lipocalins |Thrombin inhibitor |Thrombin inhibitor |Triatomine bug (Triatoma pallidipennis) [TaxId: 30077]
d2m06a_ : (ALA1) (VAL82) [view usage] : f.4.1.1 |Transmembrane beta-barrels |OMPA-like |Outer membrane protein |Outer membrane protein X (OMPX) |Escherichia coli [TaxId: 562]
d1jiwi_ : (ARG59) (ARG102) [view usage] : b.61.2.1 |Streptavidin-like |beta-Barrel protease inhibitors |Metalloprotease inhibitor |Metalloprotease inhibitor |Pseudomonas aeruginosa, aprin [TaxId: 287]
d2grei1 : (GLY74) (GLU147) [view usage] : b.49.3.1 |Domain of alpha and beta subunits of F1 ATP synthase-like |Aminopeptidase/glucanase lid domain |Aminopeptidase/glucanase lid domain |Deblocking aminopeptidase YhfE |Bacillus cereus [TaxId: 1396]
d4jnjd_ : (GLY19) (GLU78) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Streptomyces avidinii [TaxId: 1895]
d1jmxa5 : (GLY228) (GLU281) [view usage] : b.61.4.1 |Streptavidin-like |Quinohemoprotein amine dehydrogenase A chain, domain 3 |Quinohemoprotein amine dehydrogenase A chain, domain 3 |Quinohemoprotein amine dehydrogenase A chain, domain 3 |Pseudomonas putida [TaxId: 303]
d2j43b1 : (GLY57) (ALA110) [view usage] : b.3.1.3 |Prealbumin-like |Starch-binding domain-like |PUD-like |Pullulanase PulA |Streptococcus pyogenes [TaxId: 1314]
d2lroa_ : (ALA27) (ALA90) [view usage] : b.18.1.30 |Galactose-binding domain-like |Galactose-binding domain-like |CBM11 |automated matches |Clostridium thermocellum [TaxId: 203119]
d2bzua_ : (ILE233) (ASP291) [view usage] : b.21.1.0 |Virus attachment protein globular domain |Virus attachment protein globular domain |automated matches |automated matches |Human adenovirus type 41 [TaxId: 10524]
d1yq2a4 : (THR811) (ASP876) [view usage] : b.30.5.1 |Supersandwich |Galactose mutarotase-like |beta-Galactosidase, domain 5 |beta-Galactosidase, domain 5 |Arthrobacter sp. c2-2 [TaxId: 192168]
d1y7bb2 : (GLY157) (ARG217) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |Beta-D-xylosidase N-terminal domain |Clostridium acetobutylicum [TaxId: 1488]
d1y7bb2 : (HIS249) (LYS318) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |Beta-D-xylosidase N-terminal domain |Clostridium acetobutylicum [TaxId: 1488]
d1lcvb_ : (GLY219) (ALA278) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Streptavidin |Streptomyces avidinii [TaxId: 1895]
d1bsea_ : (GLY48) (LYS108) [view usage] : d.1.1.2 |Microbial ribonucleases |Microbial ribonucleases |Bacterial ribonucleases |Barnase |Bacillus amyloliquefaciens [TaxId: 1390]
d1nbxa_ : (GLY19) (ALA78) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Streptavidin |Streptomyces avidinii [TaxId: 1895]
d3azca_ : (GLY76) (PRO165) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d1smpi_ : (VAL56) (LYS99) [view usage] : b.61.2.1 |Streptavidin-like |beta-Barrel protease inhibitors |Metalloprotease inhibitor |Metalloprotease inhibitor |Erwinia chrysanthemi [TaxId: 556]
d1lkna_ : (PRO22) (LYS62) [view usage] : b.82.1.8 |Double-stranded beta-helix |RmlC-like cupins |Hypothetical protein TM1112 |Hypothetical protein TM1112 |Thermotoga maritima [TaxId: 2336]
d4drra_ : (ASP79) (SER134) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Rotavirus sp. [TaxId: 10970]
d2oojb_ : (ALA61) (ALA135) [view usage] : b.159.2.1 |AOC barrel-like |SO1590-like |SO1590-like |Hypothetical protein SO1590 |Shewanella oneidensis [TaxId: 70863]
d1qu5a_ : (ASN610) (ILE665) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Phosphotyrosine binding domain of Rad53 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1bbpa_ : (GLY25) (GLY95) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Bilin-binding protein |Cabbage butterfly (Pieris brassicae) [TaxId: 7116]
d4ayna_ : (GLY213) (GLY280) [view usage] : f.4.1.0 |Transmembrane beta-barrels |OMPA-like |automated matches |automated matches |Neisseria meningitidis [TaxId: 487]
d2ioba2 : (THR136) (GLN191) [view usage] : d.3.1.15 |Cysteine proteinases |Cysteine proteinases |CHAP domain |Glutathionylspermidine synthase, amidase domain |Escherichia coli [TaxId: 562]
d1yp6a1 : (GLU43) (PRO93) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Mouse (Mus musculus) [TaxId: 10090]
d1t9ha1 : (ILE7) (GLU62) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Probable GTPase EngC (YjeQ), N-terminal domain |Bacillus subtilis [TaxId: 1423]
d4aiea2 : (ASP467) (PRO529) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Lactobacillus acidophilus [TaxId: 272621]
d4arxa3 : (GLY512) (SER575) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Bacillus thuringiensis [TaxId: 29339]
d2zsca_ : (GLY10) (GLY64) [view usage] : b.61.1.0 |Streptavidin-like |Avidin/streptavidin |automated matches |automated matches |Pleurotus cornucopiae [TaxId: 5321]
d3fiqa_ : (GLN40) (VAL90) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ouya_ : (THR7) (ARG57) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |MAP kinase p38 |Human (Homo sapiens) [TaxId: 9606]
d2ce8a_ : (ASP530) (ALA579) [view usage] : b.69.4.1 |7-bladed beta-propeller |WD40 repeat-like |WD40-repeat |Groucho/tle1, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1lwha1 : (ALA392) (PRO435) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |4-alpha-glucanotransferase |Thermotoga maritima [TaxId: 2336]
d1nqma_ : (THR20) (ALA78) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Streptavidin |Streptomyces avidinii [TaxId: 1895]
d1wfma_ : (ALA12) (GLU75) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptotagmin XIII |Human (Homo sapiens) [TaxId: 9606]
d3hjea2 : (GLU642) (ILE684) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d1m7xa2 : (GLY625) (GLY668) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |1,4-alpha-glucan branching enzyme |Escherichia coli [TaxId: 562]
d1x9ya1 : (GLY346) (TYR393) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Staphopain SspB |Staphylococcus aureus [TaxId: 1280]
d1gydb_ : (ALA160) (ARG227) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1i04a_ : (GLU61) (PRO111) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Mouse (Mus musculus) [TaxId: 10090]
d2gzba_ : (PRO110) (THR162) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Bauhinia bauhinioides [TaxId: 166014]
d4bbod_ : (TRP50) (PHE111) [view usage] : b.61.1.0 |Streptavidin-like |Avidin/streptavidin |automated matches |automated matches |Bradyrhizobium japonicum [TaxId: 375]
d1t0va1 : (GLY24) (GLY91) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Bilin-binding protein |Cabbage butterfly (Pieris brassicae) [TaxId: 7116]
d1iv8a1 : (GLU654) (THR696) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Maltooligosyl trehalose synthase |Sulfolobus acidocaldarius [TaxId: 2285]
d1gt3a_ : (ARG41) (VAL92) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Odorant-binding protein |Cow (Bos taurus) [TaxId: 9913]
d1bnsa_ : (GLY48) (LYS108) [view usage] : d.1.1.2 |Microbial ribonucleases |Microbial ribonucleases |Bacterial ribonucleases |Barnase |Bacillus amyloliquefaciens [TaxId: 1390]
d2lgca_ : (THR7) (SER56) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |MAP kinase p38 |Human (Homo sapiens) [TaxId: 9606]
d2gzbb_ : (PRO110) (THR162) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Bauhinia bauhinioides [TaxId: 166014]
d1yqja_ : (THR7) (ARG57) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |MAP kinase p38 |Human (Homo sapiens) [TaxId: 9606]
d4iz5a_ : (PRO11) (SER57) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |MAP kinase Erk2 |Human (Homo sapiens) [TaxId: 9606]
d3q2la1 : (THR32) (VAL98) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Mouse (Mus musculus) [TaxId: 10090]
d2r3ya2 : (GLY80) (ASN133) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Stress sensor protease DegS, catalytic domain |Escherichia coli [TaxId: 562]
d1mupa_ : (GLU47) (PRO97) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Mouse (Mus musculus) [TaxId: 10090]
d2cala_ : (PRO1062) (THR1126) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |automated matches |Thiobacillus ferrooxidans [TaxId: 920]
d1yi7a2 : (HIS249) (LYS318) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |Beta-D-xylosidase N-terminal domain |Clostridium acetobutylicum [TaxId: 1488]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, b.69, b.29, b.67, b.30, b.47, f.4, d.144, b.40, b.60, b.18, d.3, b.6, b.1, b.42, b.21, b.26, b.61, b.7, b.3,
d.1, b.71, b.33, b.49, b.159