Tableau information
Concept source: d1rfsa_ amino acid (a.a.) range (VAL113)(PRO163)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL113) (ALA119) E1
(LYS122) (CYS127) E2
(HIS128) (ASN133) E3
(ALA148) (VAL154) E4
(LYS158) (PRO163) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 139.0° E2
E3 -54.3° 166.3° E3
E4 -76.9° 124.1° -48.8° E4
E5 110.2° -71.3° 109.3° 148.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2kpwa_ : (ARG60) (THR117) [view usage] : b.1.16.0 |Immunoglobulin-like beta-sandwich |Lamin A/C globular tail domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a1ha_ : (GLN11) (LEU90) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1iw7c_ : (GLY795) (VAL849) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus thermophilus [TaxId: 274]
d1lnsa2 : (MET610) (GLU670) [view usage] : b.18.1.13 |Galactose-binding domain-like |Galactose-binding domain-like |PepX C-terminal domain-like |X-Prolyl dipeptidyl aminopeptidase PepX |Lactococcus lactis [TaxId: 1358]
d1v8ma_ : (ARG11) (MET53) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase |Thermus thermophilus [TaxId: 274]
d1bcce1 : (GLY143) (GLY196) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain |Chicken (Gallus gallus) [TaxId: 9031]
d1od2b2 : (SER1865) (PRO1920) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ezve1 : (GLY163) (GLY215) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2hg8b_ : (GLN511) (LEU590) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |Branched-chain aminoacid aminotransferase |Human (Homo sapiens), mitochondrial [TaxId: 9606]
d1clqa1 : (LYS2) (ALA63) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Bacteriophage RB69 [TaxId: 12353]
d1poza_ : (VAL86) (LYS158) [view usage] : d.169.1.4 |C-type lectin-like |C-type lectin-like |Link domain |CD44, hyaluronan binding domain |Human (Homo sapiens) [TaxId: 9606]
d3gcea_ : (GLY61) (ALA110) [view usage] : b.33.1.0 |ISP domain |ISP domain |automated matches |automated matches |Nocardioides aromaticivorans [TaxId: 200618]
d2ox7b_ : (ASP37) (GLU83) [view usage] : b.172.1.1 |YopX-like |YopX-like |YopX-like |Hypothetical protein EF1440 |Enterococcus faecalis [TaxId: 1351]
d1k0sa_ : (SER80) (ASP129) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |Chemotaxis protein CheW |Thermotoga maritima [TaxId: 2336]
d2qpza_ : (GLY54) (SER103) [view usage] : b.33.1.0 |ISP domain |ISP domain |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
d3gvka1 : (LYS276) (ASP331) [view usage] : b.68.1.2 |6-bladed beta-propeller |Sialidases |Endo-alpha-sialidase |automated matches |Enterobacteria phage [TaxId: 344021]
d1nyka_ : (SER140) (GLY191) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Soluble Rieske protein |Thermus thermophilus [TaxId: 274]
d2cz9a1 : (ILE2) (SER57) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d3c0dc_ : (GLY58) (TYR107) [view usage] : b.33.1.3 |ISP domain |ISP domain |NirD-like |NADH-nitrite reductase small subunit NirD |Vibrio parahaemolyticus [TaxId: 670]
d1hq2a_ : (GLY81) (PRO114) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Escherichia coli [TaxId: 562]
d1dyka2 : (GLY3082) (VAL3113) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Laminin alpha2 chain |Mouse (Mus musculus) [TaxId: 10090]
d3h1he2 : (GLY143) (GLY196) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d4l82a_ : (ALA98) (GLY135) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Rickettsia felis [TaxId: 315456]
d4pofa_ : (LYS90) (SER133) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d1gvme_ : (THR205) (ASP272) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1rfsa_ : (VAL113) (PRO163) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |ISP subunit from chloroplast cytochrome bf complex |Spinach (Spinacia oleracea) [TaxId: 3562]
d2zgka_ : (GLY95) (THR153) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Agrocybe aegerita [TaxId: 5400]
d1yoaa1 : (HIS96) (ALA134) [view usage] : b.45.1.2 |Split barrel-like |FMN-binding split barrel |NADH:FMN oxidoreductase-like |Putative flavoprotein TTHA0420 |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, d.58, b.29, c.14, b.40, c.55, b.18, d.169, d.14, e.17, b.1, b.45, b.109, d.113, b.33, b.172, e.29