Tableau information
Concept source: d3vu3e_ amino acid (a.a.) range (VAL22)(TYR55)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL22) (LEU26) E1
(GLY29) (GLY34) E2
(GLU37) (GLN41) E3
(PHE42) (LYS47) E4
(VAL50) (TYR55) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 151.4° E2
E3 45.2° -126.7° E3
E4 -129.6° 58.0° 174.7° E4
E5 52.5° -130.0° -16.8° 163.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1qqgb2 : (THR191) (GLN239) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Insulin receptor substrate 1, IRS-1 |Human (Homo sapiens) [TaxId: 9606]
d3o4fe_ : (LYS5) (LEU49) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1wtpa_ : (VAL2) (SER46) [view usage] : b.34.13.1 |SH3-like barrel |Chromo domain-like |"Histone-like" proteins from archaea |automated matches |Sulfolobus acidocaldarius [TaxId: 2285]
d1su1a_ : (LEU130) (ASN183) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Phosphodiesterase yfcE |Escherichia coli [TaxId: 562]
d2h6la1 : (ALA49) (GLY103) [view usage] : d.290.1.3 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |AF0104-like |Hypothetical protein AF0104 |Archaeoglobus fulgidus [TaxId: 2234]
d1dkha_ : (SER42) (GLN88) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Serratia marcescens [TaxId: 615]
d1uirb_ : (MET5) (ASP50) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Thermus thermophilus [TaxId: 274]
d4v19t_ : (LEU117) (CYS163) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d2pt9c_ : (LYS41) (LEU87) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d1viea_ : (ARG29) (PRO70) [view usage] : b.34.4.1 |SH3-like barrel |Electron transport accessory proteins |R67 dihydrofolate reductase |R67 dihydrofolate reductase |Escherichia coli, plasmid PLZ1 [TaxId: 562]
d2l8da_ : (VAL16) (ALA52) [view usage] : b.34.9.1 |SH3-like barrel |Tudor/PWWP/MBT |Tudor domain |Lamin-b receptor |Chicken (Gallus gallus) [TaxId: 9031]
d1gpma2 : (TRP140) (GLN179) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GMP synthetase |Escherichia coli [TaxId: 562]
d4cj2c_ : (VAL2) (VAL45) [view usage] : b.34.13.1 |SH3-like barrel |Chromo domain-like |"Histone-like" proteins from archaea |automated matches |Sulfolobus acidocaldarius [TaxId: 2285]
d4jesb_ : (ARG40) (GLN86) [view usage] : d.35.1.0 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d2i7cb_ : (LYS2) (LEU49) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d1vw4m_ : (VAL75) (ARG122) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d2nmua1 : (ASP51) (HIS100) [view usage] : d.290.1.3 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |AF0104-like |Hypothetical protein STM3071 |Salmonella typhimurium [TaxId: 90371]
d3hwua_ : (SER76) (HIS133) [view usage] : d.290.1.0 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 264198]
d3anxb_ : (MET5) (ASP50) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2au1a_ : (ALA248) (VAL298) [view usage] : d.3.1.12 |Cysteine proteinases |Cysteine proteinases |IgG-specific endopeptidase IdeS (Sib38) |IgG-specific endopeptidase IdeS (Sib38) |Streptococcus pyogenes [TaxId: 1314]
d2j01t1 : (GLY25) (PRO77) [view usage] : b.34.5.6 |SH3-like barrel |Translation proteins SH3-like domain |Ribosomal protein L19 |Ribosomal protein L19 |Thermus thermophilus [TaxId: 274]
d2h6lb_ : (ALA49) (GLY103) [view usage] : d.290.1.3 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |AF0104-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d2fb7a1 : (ILE22) (ARG78) [view usage] : b.38.1.5 |Sm-like fold |Sm-like ribonucleoproteins |LSM14 N-terminal domain-like |LSM14 homolog A (Lsm14a) |Zebrafish (Danio rerio) [TaxId: 7955]
d3o4fc_ : (LYS5) (LEU49) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2htec_ : (LYS3) (LEU50) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d3anxa_ : (MET5) (ASP50) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2jn0a1 : (TYR5) (ASN43) [view usage] : b.38.1.6 |Sm-like fold |Sm-like ribonucleoproteins |YgdI/YgdR-like |Hypothetical lipoprotein YgdR |Escherichia coli [TaxId: 562]
d1ox9a_ : (THR27) (PRO86) [view usage] : b.136.1.1 |SspB-like |SspB-like |Stringent starvation protein B, SspB |Stringent starvation protein B, SspB |Escherichia coli [TaxId: 562]
d3rieb_ : (LYS41) (LEU88) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d2hx0a_ : (ASP51) (HIS100) [view usage] : d.290.1.3 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |AF0104-like |automated matches |Salmonella enterica [TaxId: 28901]
d2g3ra2 : (VAL1544) (LYS1582) [view usage] : b.34.9.1 |SH3-like barrel |Tudor/PWWP/MBT |Tudor domain |p53-binding protein 1, 53BP1 |Human (Homo sapiens) [TaxId: 9606]
d4jeth_ : (ARG40) (GLN86) [view usage] : d.35.1.0 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |automated matches |automated matches |Yersinia pestis [TaxId: 632]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.159, i.1, c.66, c.23, d.3, b.55, b.34, b.136, b.38, d.290, d.35