Tableau information
Concept source: d1hxma2 amino acid (a.a.) range (SER128)(GLY181)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER128) (ASN134) E1
(ASN137) (PRO147) E2
(ASP149) (VAL155) E3
(ILE160) (ILE169) E4
(TYR175) (GLY181) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 161.9° E2
E3 -43.6° 152.5° E3
E4 136.6° -28.7° 145.7° E4
E5 -32.9° 160.3° -33.9° 169.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1gr3a_ : (GLY587) (ILE641) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Collagen NC1 trimerisation domain |Human (Homo sapiens), isoform X [TaxId: 9606]
d2p39a_ : (MET74) (PRO110) [view usage] : b.42.1.0 |beta-Trefoil |Cytokine |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1uqxa_ : (VAL5) (GLY51) [view usage] : b.115.1.1 |Calcium-mediated lectin |Calcium-mediated lectin |Calcium-mediated lectin |Mannose-specific lectin RS-IIL |Ralstonia solanacearum [TaxId: 305]
d1uqxa_ : (GLN53) (TRP110) [view usage] : b.115.1.1 |Calcium-mediated lectin |Calcium-mediated lectin |Calcium-mediated lectin |Mannose-specific lectin RS-IIL |Ralstonia solanacearum [TaxId: 305]
d4m9pa1 : (ALA482) (TYR543) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nc7b_ : (ARG5) (ARG67) [view usage] : b.123.1.1 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Thermotoga maritima [TaxId: 2336]
d1t2xa3 : (TYR151) (ASP208) [view usage] : b.69.1.1 |7-bladed beta-propeller |Galactose oxidase, central domain |Galactose oxidase, central domain |Galactose oxidase, central domain |Dactylium dendroides [TaxId: 5132]
d2boia_ : (VAL5) (ILE55) [view usage] : b.115.1.0 |Calcium-mediated lectin |Calcium-mediated lectin |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
d1qu0a_ : (MET2981) (ASP3038) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Laminin alpha2 chain |Mouse (Mus musculus) [TaxId: 10090]
d1lf6a2 : (SER132) (SER191) [view usage] : b.30.5.5 |Supersandwich |Galactose mutarotase-like |Bacterial glucoamylase N-terminal domain-like |Bacterial glucoamylase, N-terminal domain |Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
d1qygh2 : (SER120) (PRO194) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d2jixb2 : (GLY126) (ASN185) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Erythropoietin (EPO) receptor |Human (Homo sapiens) [TaxId: 9606]
d1uija1 : (ASN59) (PRO104) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]
d1kcwa2 : (GLY253) (VAL308) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Ceruloplasmin |Human (Homo sapiens) [TaxId: 9606]
d4hscx_ : (PRO509) (THR569) [view usage] : f.9.1.1 |Perfringolysin |Perfringolysin |Perfringolysin |automated matches |Streptococcus pyogenes [TaxId: 193567]
d1g8kb_ : (LEU4) (SER72) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Arsenite oxidase Rieske subunit |Alcaligenes faecalis [TaxId: 511]
d2xkua_ : (MET6) (GLU69) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2avfb1 : (PRO71) (LYS125) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
d3od3a3 : (MET421) (LEU483) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |multi-copper oxidase CueO |Escherichia coli [TaxId: 562]
d1cwva4 : (GLU839) (PRO886) [view usage] : b.1.14.1 |Immunoglobulin-like beta-sandwich |Invasin/intimin cell-adhesion fragments |Invasin/intimin cell-adhesion fragments |Invasin |Yersinia pseudotuberculosis [TaxId: 633]
d1wmda1 : (ALA333) (ALA406) [view usage] : b.18.1.20 |Galactose-binding domain-like |Galactose-binding domain-like |Proprotein convertase P-domain |Alkaline serine protease kp-43, C-terminal domain |Bacillus sp. KSM-KP43 [TaxId: 109322]
d1gofa3 : (TYR151) (PRO209) [view usage] : b.69.1.1 |7-bladed beta-propeller |Galactose oxidase, central domain |Galactose oxidase, central domain |Galactose oxidase, central domain |Dactylium dendroides [TaxId: 5132]
d3d6ra_ : (MET106) (SER161) [view usage] : d.299.1.1 |Ns1 effector domain-like |Ns1 effector domain-like |Ns1 effector domain-like |automated matches |Influenza A virus [TaxId: 381517]
d2fjub2 : (LYS730) (ASP799) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |Phospholipase C-beta-2 |Human (Homo sapiens) [TaxId: 9606]
d1pfca_ : (GLU347) (VAL412) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Guinea pig (Cavia porcellus) [TaxId: 10141]
d1qu0c_ : (MET2981) (ASP3038) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Laminin alpha2 chain |Mouse (Mus musculus) [TaxId: 10090]
d2ijd11 : (ARG130) (ARG176) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human poliovirus 1 Mahoney [TaxId: 12081]
d1swrb_ : (SER62) (LYS132) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Streptavidin |Streptomyces avidinii [TaxId: 1895]
d1iray2 : (PHE108) (ASN165) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Type-1 interleukin-1 receptor |Human (Homo sapiens) [TaxId: 9606]
d1vpra1 : (MSE1070) (PRO1120) [view usage] : b.60.1.7 |Lipocalins |Lipocalins |Dinoflagellate luciferase repeat |Dinoflagellate luciferase |Lingulodinium polyedrum [TaxId: 160621]
d4dnla_ : (TYR163) (LYS230) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2j71a1 : (GLY49) (TYR103) [view usage] : b.3.1.3 |Prealbumin-like |Starch-binding domain-like |PUD-like |Pullulanase PulA |Thermotoga maritima [TaxId: 2336]
d1qhda2 : (GLY149) (ARG216) [view usage] : b.19.1.1 |Viral protein domain |Viral protein domain |Top domain of virus capsid protein |vp6, the major capsid protein of group A rotavirus |Bovine rotavirus [TaxId: 10927]
d1ytda1 : (GLU287) (LEU358) [view usage] : c.1.17.1 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |NadC C-terminal domain-like |Nicotinate phosphoribosyltransferase Ta1145 |Thermoplasma acidophilum [TaxId: 2303]
d2j72b_ : (GLY50) (TYR104) [view usage] : b.3.1.3 |Prealbumin-like |Starch-binding domain-like |PUD-like |Pullulanase PulA |Thermotoga maritima [TaxId: 2336]
d2poaa_ : (ARG78) (SER133) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d2d4wa2 : (GLN261) (VAL310) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Cellulomonas sp. [TaxId: 40001]
d2ocfd_ : (VAL11) (GLY61) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4fvba_ : (GLY61) (GLN102) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d1xd6a_ : (GLY7) (SER106) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Gastrodianin (antifungal protein) |Gastrodia elata [TaxId: 91201]
d1hcfx_ : (ALA286) (GLY344) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Ligand binding domain of trkB receptor |Human (Homo sapiens) [TaxId: 9606]
d1u5ya_ : (ASP144) (ALA205) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |A proliferation-inducing ligand, APRIL |Mouse (Mus musculus) [TaxId: 10090]
d2or7a_ : (THR56) (LYS109) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2bs71_ : (VAL45) (GLY87) [view usage] : b.2.3.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |F17c-type adhesin |automated matches |Escherichia coli [TaxId: 562]
d2aw2x_ : (ARG42) (ILE99) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |B- and T-lymphocyte attenuator CD272 |Human (Homo sapiens) [TaxId: 9606]
d1bmka_ : (THR7) (ARG57) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |MAP kinase p38 |Human (Homo sapiens) [TaxId: 9606]
d2o34b_ : (GLU122) (SER169) [view usage] : d.96.2.2 |T-fold |ApbE-like |DVU1097-like |automated matches |Desulfovibrio vulgaris [TaxId: 881]
d2hg0a1 : (ASN52) (LYS118) [view usage] : f.10.1.0 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |automated matches |automated matches |West Nile virus [TaxId: 11082]
d2q87a_ : (ALA4) (GLU74) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1uy2a_ : (SER61) (ASN116) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Putative xylanase |Clostridium stercorarium [TaxId: 1510]
d3eb7a3 : (SER544) (SER613) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Bacillus thuringiensis [TaxId: 1428]
d4nn0a_ : (GLY141) (MET196) [view usage] : b.22.1.0 |TNF-like |TNF-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2wq8a2 : (TYR151) (ASP208) [view usage] : b.69.1.1 |7-bladed beta-propeller |Galactose oxidase, central domain |Galactose oxidase, central domain |automated matches |Fusarium graminearum (Gibberella zeae) [TaxId: 5518]
d4v19d_ : (MET75) (TRP151) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1kcwa5 : (PRO791) (PRO843) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Ceruloplasmin |Human (Homo sapiens) [TaxId: 9606]
d1nc7a_ : (ARG5) (ARG67) [view usage] : b.123.1.1 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Thermotoga maritima [TaxId: 2336]
d1fbih2 : (SER129) (PRO193) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1t8va1 : (ASN35) (THR83) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Intestinal fatty acid binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, b.19, b.69, i.1, b.29, b.30, b.47, d.144, c.55, b.60, b.18, b.2, d.96, b.6, b.1, b.42, b.22, d.299, b.61,
b.7, b.3, b.115, b.33, b.123, f.10, b.78, f.9