Tableau information
Concept source: d4e1jc1 amino acid (a.a.) range (TYR27)(PRO71)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR27) (GLN33) E1
(SER37) (GLY45) E2
(ALA50) (GLU56) E3
(PHE57) (LYS63) E4
(GLY65) (PRO71) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 164.1° E2
E3 -14.6° 171.3° E3
E4 -20.1° 146.7° -27.2° E4
E5 139.4° -54.4° 124.8° 139.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4e1ja1 : (TYR27) (PRO71) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d2kpwa_ : (ASN14) (LYS56) [view usage] : b.1.16.0 |Immunoglobulin-like beta-sandwich |Lamin A/C globular tail domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3nsga_ : (GLN253) (ASN315) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Salmonella enterica [TaxId: 527001]
d1dkha_ : (SER91) (LEU123) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Serratia marcescens [TaxId: 615]
d2ii1a_ : (ILE20) (GLU77) [view usage] : b.23.3.0 |CUB-like |Acetamidase/Formamidase-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d1xq4c_ : (TYR11) (GLY70) [view usage] : b.1.23.1 |Immunoglobulin-like beta-sandwich |ApaG-like |ApaG-like |ApaG |Bordetella pertussis [TaxId: 520]
d3krea_ : (ILE7) (ILE42) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Ehrlichia chaffeensis [TaxId: 205920]
d1k32a2 : (ASP136) (ASN195) [view usage] : b.68.7.1 |6-bladed beta-propeller |Tricorn protease N-terminal domain |Tricorn protease N-terminal domain |Tricorn protease N-terminal domain |Thermoplasma acidophilum [TaxId: 2303]
d3g25a1 : (MSE1) (ASP47) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d3nuab_ : (LEU8) (GLU45) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Clostridium perfringens [TaxId: 195103]
d2rdkb_ : (ASN10) (ASN86) [view usage] : b.89.1.1 |Cyanovirin-N |Cyanovirin-N |Cyanovirin-N |automated matches |Nostoc ellipsosporum [TaxId: 45916]
d1w23a_ : (LEU145) (ILE207) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Phosphoserine aminotransferase, PSAT |Bacillus alcalophilus [TaxId: 1445]
d1yc7a_ : (VAL2) (SER53) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d2ibba2 : (SER464) (ASN515) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Hedgehog receptor iHog |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1a0sp_ : (TYR118) (GLY185) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Sucrose-specific porin |Salmonella typhimurium [TaxId: 90371]
d1ngla_ : (TYR53) (GLY96) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
d1fcpa_ : (VAL499) (GLY571) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d1zsob_ : (PRO69) (ASP127) [view usage] : b.166.1.1 |MAL13P1.257-like |MAL13P1.257-like |MAL13P1.257-like |Hypothetical protein MAL13P1.257 |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2wobc_ : (ALA11) (CYS66) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d2ii1c_ : (ILE20) (ILE78) [view usage] : b.23.3.0 |CUB-like |Acetamidase/Formamidase-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d2gqra_ : (LEU7) (ASP44) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2wobe_ : (ALA11) (CYS66) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d2pysb_ : (ASN10) (ASN86) [view usage] : b.89.1.1 |Cyanovirin-N |Cyanovirin-N |Cyanovirin-N |automated matches |Nostoc ellipsosporum [TaxId: 45916]
d2z21b_ : (ASN10) (ASN86) [view usage] : b.89.1.1 |Cyanovirin-N |Cyanovirin-N |Cyanovirin-N |automated matches |Nostoc ellipsosporum [TaxId: 45916]
d2zf5o1 : (MET1) (ASN47) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 69014]
d2i9xb_ : (THR4) (PRO48) [view usage] : d.366.1.1 |SpoVG-like |SpoVG-like |SpoVG-like |Putative septation protein SpoVG |Staphylococcus epidermidis [TaxId: 1282]
d1q47b_ : (LYS174) (THR213) [view usage] : b.69.12.1 |7-bladed beta-propeller |Sema domain |Sema domain |Semaphorin 3a |Mouse (Mus musculus) [TaxId: 10090]
d4emjb_ : (GLY52) (ASP99) [view usage] : b.33.1.0 |ISP domain |ISP domain |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
d4aayb_ : (PRO109) (GLY162) [view usage] : b.33.1.0 |ISP domain |ISP domain |automated matches |automated matches |Arsenite-oxidising bacterium [TaxId: 97708]
d1oh2q_ : (TYR118) (GLY185) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Sucrose-specific porin |Salmonella typhimurium [TaxId: 90371]
d1udxa1 : (GLY35) (ASP96) [view usage] : b.117.1.1 |Obg-fold |Obg GTP-binding protein N-terminal domain |Obg GTP-binding protein N-terminal domain |Obg GTP-binding protein N-terminal domain |Thermus thermophilus [TaxId: 274]
d2f1ea_ : (ARG6) (GLY66) [view usage] : b.1.23.1 |Immunoglobulin-like beta-sandwich |ApaG-like |ApaG-like |ApaG |Xanthomonas axonopodis [TaxId: 92829]
d1b09a_ : (ALA92) (GLY136) [view usage] : b.29.1.5 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Pentraxin (pentaxin) |C-reactive protein (CRP) |Human (Homo sapiens) [TaxId: 9606]
d2woba_ : (ALA11) (CYS66) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d1iiya_ : (ASN10) (ASN86) [view usage] : b.89.1.1 |Cyanovirin-N |Cyanovirin-N |Cyanovirin-N |Cyanovirin-N |Nostoc ellipsosporum [TaxId: 45916]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.67, b.69, b.29, f.4, c.55, b.60, b.2, b.1, d.143, b.33, b.23, b.89, d.366, d.35, b.166, b.117