Tableau information
Concept source: d1icxa_ amino acid (a.a.) range (THR51)(LYS122)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR51) (ALA57) E1
(HIS62) (ALA72) E2
(TYR80) (GLY86) E3
(LYS96) (PRO105) E4
(GLY110) (LYS122) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 154.7° E2
E3 -55.3° 144.4° E3
E4 102.1° -58.3° 157.0° E4
E5 -88.6° 109.1° -35.4° 166.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4ldeb_ : (VAL2) (ALA60) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d1i85b_ : (LEU1) (ASP51) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD86 (b7-2), N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3cu3a1 : (GLY74) (ARG136) [view usage] : d.17.4.28 |Cystatin-like |NTF2-like |BaiE/LinA-like |Uncharacterized protein NpunR1993 |Nostoc punctiforme [TaxId: 272131]
d1hqnc2 : (SER255) (PRO321) [view usage] : b.121.2.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Coat protein p3 |Coat protein p3 |Bacteriophage PRD1 [TaxId: 10658]
d3ckga_ : (GLY149) (TRP201) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d1icxa_ : (THR51) (LYS122) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Plant pathogenesis-related protein PR10 |Yellow lupine (Lupinus luteus) [TaxId: 3873]
d1qftb_ : (THR47) (VAL111) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Histamine binding protein |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d1gw7c_ : (SER3255) (ARG3317) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |p3 shell |Bacteriophage PRD1 [TaxId: 10658]
d1qfta_ : (CYS48) (VAL111) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Histamine binding protein |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d3d9wa_ : (THR101) (ASP154) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nocardia farcinica [TaxId: 37329]
d1wmxb_ : (LEU48) (THR120) [view usage] : b.18.1.24 |Galactose-binding domain-like |Galactose-binding domain-like |Family 30 carbohydrate binding module, CBM30 (PKD repeat) |Endoglucanase CelJ |Clostridium thermocellum [TaxId: 1515]
d1jv2a4 : (PHE21) (SER90) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform V [TaxId: 9606]
d1pzca_ : (GLU1) (ILE60) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Pseudoazurin |Alcaligenes faecalis, strain s-6 [TaxId: 511]
d1nyca_ : (ASN51) (ARG107) [view usage] : b.61.2.2 |Streptavidin-like |beta-Barrel protease inhibitors |Staphostatin |Staphostatin B (SspC) |Staphylococcus aureus [TaxId: 1280]
d1qleh_ : (VAL2) (PRO61) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
d2ifga2 : (PRO285) (GLY344) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |High affinity nerve growth factor receptor TrkA, different domains |Human (Homo sapiens) [TaxId: 9606]
d3g7xa_ : (CYS48) (VAL111) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d1m71b1 : (GLU1) (ALA60) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 1 [TaxId: 10090]
d1kaca_ : (ASN419) (SER479) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus type 12 [TaxId: 28282]
d3g7xb_ : (THR47) (VAL111) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d1epaa_ : (LEU47) (LEU105) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinoic acid-binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ivva_ : (GLY49) (SER119) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |Speckle-type poz protein SPOP |Human (Homo sapiens) [TaxId: 9606]
d3ghpb_ : (THR13) (VAL88) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cellulosomal scaffoldin adaptor protein B, ScaB |Acetivibrio cellulolyticus [TaxId: 35830]
d3bwka_ : (GLY189) (LEU249) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1zxfa1 : (TRP53) (HIS117) [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |Calicheamicin gene cluster protein CalC |Micromonospora echinospora [TaxId: 1877]
d2p12b_ : (ASP34) (GLY89) [view usage] : b.175.1.1 |FomD barrel-like |FomD-like |FomD-like |Hypothetical protein RHA1_ro00977 |Rhodococcus sp. RHA1 [TaxId: 101510]
d1q72h1 : (VAL2) (THR60) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 1 [TaxId: 10090]
d1wcsa1 : (TYR549) (ASN608) [view usage] : b.29.1.15 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Trypanosoma sialidase, C-terminal domain |Trypanosoma sialidase, C-terminal domain |Trypanosoma rangeli [TaxId: 5698]
d3a4ya_ : (ARG119) (GLY161) [view usage] : d.157.1.10 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |beta-CASP RNA-metabolising hydrolases |Putative RNA-degradation protein TTHA0252 |Thermus thermophilus [TaxId: 274]
d2q39a_ : (GLN68) (THR125) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Cow (Bos taurus) [TaxId: 9913]
d1y4hc_ : (ASN51) (ARG107) [view usage] : b.61.2.2 |Streptavidin-like |beta-Barrel protease inhibitors |Staphostatin |Staphostatin B (SspC) |Staphylococcus aureus [TaxId: 1280]
d1cjda2 : (ASN259) (ASP320) [view usage] : b.121.2.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Coat protein p3 |Coat protein p3 |Bacteriophage PRD1 [TaxId: 10658]
d3vlaa_ : (SER7) (CYS64) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Carrot (Daucus carota) [TaxId: 4039]
d1uh7a_ : (GLY172) (PRO227) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Bread mold (Rhizopus chinensis) [TaxId: 4843]
d2x89a_ : (VAL2) (ALA61) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d1qwxa_ : (ASN51) (ARG107) [view usage] : b.61.2.2 |Streptavidin-like |beta-Barrel protease inhibitors |Staphostatin |Staphostatin B (SspC) |Staphylococcus aureus [TaxId: 1280]
d4orsa_ : (LEU77) (GLY135) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2es3b_ : (LYS68) (SER124) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Thrombospondin 1 N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2hdxa_ : (VAL551) (GLN595) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1e5da2 : (PRO120) (ASN164) [view usage] : d.157.1.3 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |ROO N-terminal domain-like |Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain |Desulfovibrio gigas [TaxId: 879]
d1bwma2 : (GLY53) (GLY109) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Mouse (Mus musculus), beta-chain [TaxId: 10090]
d1ucua_ : (SER341) (ALA381) [view usage] : e.32.1.1 |Phase 1 flagellin |Phase 1 flagellin |Phase 1 flagellin |Phase 1 flagellin |Salmonella typhimurium [TaxId: 90371]
d2avwd_ : (TRP267) (SER329) [view usage] : d.3.1.12 |Cysteine proteinases |Cysteine proteinases |IgG-specific endopeptidase IdeS (Sib38) |automated matches |Streptococcus pyogenes [TaxId: 293653]
d1z78a1 : (LYS68) (SER124) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Thrombospondin 1 N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1g43a_ : (SER7) (THR74) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cellusomal scaffolding protein A, scaffoldin |Clostridium cellulolyticum [TaxId: 1521]
d1t66d1 : (LYS3) (SER63) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 1 [TaxId: 10090]
d2avwb_ : (TRP267) (SER329) [view usage] : d.3.1.12 |Cysteine proteinases |Cysteine proteinases |IgG-specific endopeptidase IdeS (Sib38) |automated matches |Streptococcus pyogenes [TaxId: 293653]
d1suwa_ : (GLU96) (ARG143) [view usage] : e.52.1.1 |NAD kinase/diacylglycerol kinase-like |NAD kinase/diacylglycerol kinase-like |NAD kinase-like |Inorganic polyphosphate/ATP-NAD kinase PpnK |Archaeoglobus fulgidus [TaxId: 2234]
d2apra_ : (GLY172) (PRO227) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Bread mold (Rhizopus chinensis) [TaxId: 4843]
d1io1a_ : (SER341) (ALA381) [view usage] : e.32.1.1 |Phase 1 flagellin |Phase 1 flagellin |Phase 1 flagellin |Phase 1 flagellin |Salmonella typhimurium [TaxId: 90371]
d2otpa2 : (SER98) (GLY160) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1p69a_ : (ASN419) (SER479) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus type 12 [TaxId: 28282]
d1w8xe_ : (SER255) (ARG317) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |PRD1 capsid assembly |Bacteriophage PRD1 [TaxId: 10658]
d4v19o_ : (PRO54) (THR121) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d2bqya_ : (ALA47) (LYS85) [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d1sfpa_ : (LEU4) (GLN48) [view usage] : b.23.1.1 |CUB-like |Spermadhesin, CUB domain |Spermadhesin, CUB domain |Acidic seminal fluid protein (ASFP) |Cow (Bos taurus) [TaxId: 9913]
d1p6aa_ : (ASN419) (SER479) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus type 12 [TaxId: 28282]
d1jv2a2 : (SER667) (ASP735) [view usage] : b.1.15.1 |Immunoglobulin-like beta-sandwich |Integrin domains |Integrin domains |Thigh, calf-1 and calf-2 domains of integrin alpha |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.69, i.1, b.29, d.157, b.76, b.50, d.129, i.6, b.40, b.60, b.18, b.121, d.3, b.2, b.6, b.1, d.17, b.21, b.61, d.93,
e.52, b.23, b.8, b.175, e.32