Tableau information
Concept source: d1e54a_ amino acid (a.a.) range (PRO182)(GLN264)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO182) (GLY197) E1
(ALA200) (TYR212) E2
(LYS218) (ARG230) E3
(GLY233) (PRO248) E4
(VAL252) (GLN264) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 167.2° E2
E3 -20.6° 170.3° E3
E4 150.9° -19.7° 169.9° E4
E5 -43.2° 142.3° -29.1° 160.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1u5da1 : (ILE109) (MET164) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Src kinase-associated phosphoprotein SKAP55 (SCAP1) |Human (Homo sapiens) [TaxId: 9606]
d3qdge2 : (HIS155) (ALA244) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1iwma_ : (ARG49) (ALA94) [view usage] : b.125.1.2 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |Outer membrane lipoprotein receptor LolB |Outer membrane lipoprotein receptor LolB |Escherichia coli [TaxId: 562]
d3t3ja_ : (TYR123) (TRP168) [view usage] : d.82.2.1 |N domain of copper amine oxidase-like |Frataxin/Nqo15-like |Frataxin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fbeb_ : (ARG129) (ILE183) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |Similar to Ret finger protein-like 1 |Human (Homo sapiens) [TaxId: 9606]
d3s5fb_ : (TYR123) (TRP168) [view usage] : d.82.2.1 |N domain of copper amine oxidase-like |Frataxin/Nqo15-like |Frataxin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4i9sa_ : (LYS82) (PHE134) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d1e54a_ : (PRO182) (GLN264) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Comamonas acidovorans [TaxId: 80866]
d3f9da_ : (LYS82) (TYR134) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d3wjva_ : (ARG49) (ALA94) [view usage] : b.125.1.2 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |Outer membrane lipoprotein receptor LolB |Outer membrane lipoprotein receptor LolB |Escherichia coli [TaxId: 562]
d2flja_ : (LYS83) (GLN133) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Migratory locust (Locusta migratoria) [TaxId: 7004]
d1g99a1 : (MET1) (LEU54) [view usage] : c.55.1.2 |Ribonuclease H-like motif |Actin-like ATPase domain |Acetokinase-like |Acetate kinase |Methanosarcina thermophila [TaxId: 2210]
d2ojxa1 : (GLY422) (LEU463) [view usage] : d.223.1.2 |Polo-box domain |Polo-box domain |Polo-box duplicated region |Serine/threonine-protein kinase plk C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3khya1 : (SER2) (LEU54) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Francisella tularensis [TaxId: 119856]
d1q4kb1 : (GLY422) (LEU463) [view usage] : d.223.1.2 |Polo-box domain |Polo-box domain |Polo-box duplicated region |Serine/threonine-protein kinase plk C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4qypa_ : (LYS83) (VAL129) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2w7qa_ : (GLY57) (GLN99) [view usage] : b.125.1.0 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1opaa_ : (LYS83) (VAL129) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein II (CRBP) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2rcqa_ : (LYS83) (VAL129) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3fa7a_ : (LYS82) (ARG136) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d1xsia2 : (LYS91) (LYS135) [view usage] : b.30.5.11 |Supersandwich |Galactose mutarotase-like |YicI N-terminal domain-like |Putative glucosidase YicI, N-terminal domain |Escherichia coli [TaxId: 562]
d4eeja_ : (LYS83) (VAL129) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2pysa_ : (SER16) (ASN86) [view usage] : b.89.1.1 |Cyanovirin-N |Cyanovirin-N |Cyanovirin-N |automated matches |Nostoc ellipsosporum [TaxId: 45916]
d4edea_ : (LYS83) (LYS133) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a0sp_ : (GLY333) (VAL428) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Sucrose-specific porin |Salmonella typhimurium [TaxId: 90371]
d4i9ra_ : (LYS82) (PHE134) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d1we5a2 : (LYS91) (LYS135) [view usage] : b.30.5.11 |Supersandwich |Galactose mutarotase-like |YicI N-terminal domain-like |Putative glucosidase YicI, N-terminal domain |Escherichia coli [TaxId: 562]
d1af6a_ : (GLY276) (LEU347) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Maltoporin (also LamB protein) |Escherichia coli [TaxId: 562]
d3i17a_ : (LYS82) (VAL135) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d1tlta2 : (LYS181) (ASP239) [view usage] : d.81.1.5 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Glucose 6-phosphate dehydrogenase-like |Virulence factor MviM |Escherichia coli [TaxId: 562]
d2pora_ : (ASP115) (LYS191) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodobacter capsulatus [TaxId: 1061]
d1t16a_ : (ALA324) (HIS422) [view usage] : f.4.3.4 |Transmembrane beta-barrels |Porins |Outer membrane protein transport protein |Long-chain fatty acid transport protein FadL |Escherichia coli [TaxId: 562]
d4exza_ : (LYS83) (VAL129) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4m6sa_ : (LYS82) (VAL135) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d1ggla_ : (GLN83) (ARG131) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein III |Human (Homo sapiens) [TaxId: 9606]
d4gkca_ : (LYS83) (VAL129) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3fa6a_ : (LYS82) (PHE134) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d1uypa1 : (TYR324) (THR372) [view usage] : b.29.1.19 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 32 C-terminal domain |Beta-fructosidase (invertase), C-terminal domain |Thermotoga maritima [TaxId: 2336]
d2iwgb1 : (PRO46) (ALA107) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |52 kDa Ro protein |Human (Homo sapiens) [TaxId: 9606]
d1ly7a_ : (TYR123) (TRP168) [view usage] : d.82.2.1 |N domain of copper amine oxidase-like |Frataxin/Nqo15-like |Frataxin-like |C-terminal domain of frataxin |Human (Homo sapiens) [TaxId: 9606]
d4ruua_ : (LYS83) (VAL129) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1v7va2 : (GLN97) (PHE157) [view usage] : b.30.5.3 |Supersandwich |Galactose mutarotase-like |Glycosyltransferase family 36 N-terminal domain |Chitobiose phosphorylase ChbP |Vibrio proteolyticus [TaxId: 671]
d1akla1 : (ASP256) (ASP312) [view usage] : b.80.7.1 |Single-stranded right-handed beta-helix |beta-Roll |Serralysin-like metalloprotease, C-terminal domain |Metalloprotease |Pseudomonas aeruginosa [TaxId: 287]
d1oh2q_ : (GLY333) (VAL428) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Sucrose-specific porin |Salmonella typhimurium [TaxId: 90371]
d1q4ob1 : (GLY422) (TYR462) [view usage] : d.223.1.2 |Polo-box domain |Polo-box domain |Polo-box duplicated region |Serine/threonine-protein kinase plk C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2ft9a1 : (ILE34) (LYS79) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver basic fatty acid binding protein, LB_FABP |Axolotl (Ambystoma mexicanum) [TaxId: 8296]
d2ft9a1 : (LYS79) (SER122) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver basic fatty acid binding protein, LB_FABP |Axolotl (Ambystoma mexicanum) [TaxId: 8296]
d1jova_ : (SER99) (GLY156) [view usage] : b.30.5.7 |Supersandwich |Galactose mutarotase-like |Hypothetical protein HI1317 |Hypothetical protein HI1317 |Haemophilus influenzae [TaxId: 727]
d1slia1 : (SER179) (GLY236) [view usage] : b.29.1.9 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Leech intramolecular trans-sialidase, N-terminal domain |Leech intramolecular trans-sialidase, N-terminal domain |North american leech (Macrobdella decora) [TaxId: 6405]
d2qo5a_ : (ASP33) (LYS79) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d2qo5a_ : (LYS79) (LYS123) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d4h0ob1 : (SER2) (GLU55) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d4h0pa1 : (ALA5) (ASP65) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Cryptococcus neoformans [TaxId: 5207]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, b.29, b.30, f.4, c.55, b.60, d.81, b.1, b.125, b.55, d.223, d.82, b.89