Tableau information
Concept source: d3prna_ amino acid (a.a.) range (MET1)(SER74)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET1) (GLU16) E1
(ILE26) (ASP42) E2
(GLY44) (ASP57) E3
(ALA62) (GLY66) E4
(ALA68) (SER74) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 160.9° E2
E3 -32.5° 165.1° E3
E4 143.0° -17.9° 171.3° E4
E5 127.3° -40.2° 153.0° -32.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2dm7a_ : (ARG52) (ALA94) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2qpsa1 : (ALA353) (LYS404) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Plant alpha-amylase |Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
d4h8pa_ : (GLY66) (PRO120) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2h6ca2 : (ILE43) (SER80) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Chlorophenol reduction protein CprK |Desulfitobacterium dehalogenans [TaxId: 36854]
d3prna_ : (MET1) (SER74) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]
d1xpna_ : (ARG109) (SER159) [view usage] : b.3.7.1 |Prealbumin-like |Hypothetical protein PA1324 |Hypothetical protein PA1324 |Hypothetical protein PA1324 |Pseudomonas aeruginosa [TaxId: 287]
d2vdca3 : (ALA332) (PRO387) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Alpha subunit of glutamate synthase, N-terminal domain |Azospirillum brasilense [TaxId: 192]
d1duda_ : (ALA65) (VAL123) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Escherichia coli [TaxId: 562]
d4hzya_ : (GLY408) (ASP460) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d1kmoa_ : (SER400) (HIS500) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d1kmoa_ : (VAL604) (GLY693) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d3gzxa1 : (SER57) (TYR122) [view usage] : b.33.1.0 |ISP domain |ISP domain |automated matches |automated matches |Comamonas testosteroni [TaxId: 285]
d2e7ba_ : (LYS53) (ALA95) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hzza_ : (GLY408) (ASP460) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d3p2ta1 : (TRP46) (GLY96) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2xy1a1 : (LYS256) (VAL300) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hzva_ : (GLY408) (ASP460) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d1hzhh2 : (GLY118) (SER180) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Human (Homo sapiens) [TaxId: 9606]
d4ks3a_ : (GLY408) (ASP460) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza a virus [TaxId: 385580]
d4h8qa_ : (GLY66) (PRO120) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3ly6a3 : (GLY472) (GLU535) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), tissue isozyme [TaxId: 9606]
d2prna_ : (MET1) (THR73) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]
d2lqra_ : (HIS54) (ALA101) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4m3ma_ : (GLY408) (ASP460) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza a virus [TaxId: 385580]
d1cx4a1 : (VAL179) (ASN215) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Regulatory subunit of Protein kinase A |Norway rat (Rattus norvegicus) [TaxId: 10116]
d8prna_ : (MET1) (THR73) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]
d1oioa_ : (SER107) (THR178) [view usage] : b.2.3.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |F17c-type adhesin |Fimbrial lectin GafD |Escherichia coli [TaxId: 562]
d1kv3a2 : (GLY472) (GLU535) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), tissue isozyme [TaxId: 9606]
d2zqka1 : (ALA58) (ALA92) [view usage] : b.1.14.0 |Immunoglobulin-like beta-sandwich |Invasin/intimin cell-adhesion fragments |automated matches |automated matches |Escherichia coli [TaxId: 83334]
d4b7ja_ : (TYR402) (ASP459) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d4ks1a_ : (GLY408) (ASP460) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza a virus [TaxId: 385580]
d6prna_ : (MET1) (SER74) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]
d2kkqa_ : (ARG62) (ALA109) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.82, f.4, d.153, b.2, b.85, b.1, b.3, b.71, b.33