Tableau information
Concept source: d4kuxa_ amino acid (a.a.) range (HIS20)(MET90)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(HIS20) (GLU25) H1
(GLU25) (GLN36) H2
(GLU43) (PHE62) H3
(LEU66) (MET90) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -47.4° H2
H3 156.3° 140.4° H3
H4 -69.8° -42.8° 132.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ps4b_ : (THR28) (SER102) [view usage] : a.128.1.5 |Terpenoid synthases |Terpenoid synthases |Trichodiene synthase |Trichodiene synthase |Fusarium sporotrichioides [TaxId: 5514]
d1kplb_ : (GLY387) (GLY440) [view usage] : f.20.1.1 |Clc chloride channel |Clc chloride channel |Clc chloride channel |Clc chloride channel |Salmonella typhimurium [TaxId: 90371]
d1hf0a1 : (THR110) (ARG158) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Oct-1 POU Homeodomain |Human (Homo sapiens) [TaxId: 9606]
d2p06b1 : (MSE1) (SER82) [view usage] : a.204.1.3 |all-alpha NTP pyrophosphatases |all-alpha NTP pyrophosphatases |AF0060-like |Hypothetical protein AF0060 |Archaeoglobus fulgidus [TaxId: 2234]
d1p7ia_ : (SER10) (LYS55) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Engrailed Homeodomain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1p7jb_ : (SER9) (LYS55) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Engrailed Homeodomain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3a01a_ : (THR193) (GLU246) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1oaia_ : (SER564) (GLY610) [view usage] : a.5.2.3 |RuvA C-terminal domain-like |UBA-like |TAP-C domain-like |FG-binding, C-terminal domain of TAP |Human (Homo sapiens) [TaxId: 9606]
d1af8a_ : (ASP41) (ALA86) [view usage] : a.28.1.1 |Acyl carrier protein-like |ACP-like |Acyl-carrier protein (ACP) |Actinorhodin polyketide synthase acyl carrier protein, ACT ACP |Streptomyces coelicolor, A3(2) [TaxId: 1902]
d4kuxa_ : (HIS20) (MET90) [view usage] : a.128.1.4 |Terpenoid synthases |Terpenoid synthases |Aristolochene/pentalenene synthase |automated matches |Aspergillus terreus [TaxId: 33178]
d3byia_ : (PRO368) (ALA420) [view usage] : a.116.1.0 |GTPase activation domain, GAP |GTPase activation domain, GAP |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2h1rb_ : (THR201) (GLY272) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1h3lb_ : (SER28) (TYR101) [view usage] : a.177.1.1 |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma factor SigR |Streptomyces coelicolor A3(2) [TaxId: 100226]
d1ocpa_ : (LYS11) (GLN61) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Oct-3 POU Homeodomain |Mouse (Mus musculus) [TaxId: 10090]
d1h3la_ : (SER28) (ARG102) [view usage] : a.177.1.1 |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma factor SigR |Streptomyces coelicolor A3(2) [TaxId: 100226]
d1ap4a_ : (SER37) (MET85) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Human (Homo sapiens), cardiac isoform [TaxId: 9606]
d1bv2a_ : (CYS3) (GLY57) [view usage] : a.52.1.1 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Plant lipid-transfer and hydrophobic proteins |Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) |Rice (Oryza sativa) [TaxId: 4530]
d1iufa2 : (TYR79) (LEU140) [view usage] : a.4.1.7 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Centromere-binding |Ars-binding protein 1, ABP1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2q9zb_ : (THR28) (SER102) [view usage] : a.128.1.5 |Terpenoid synthases |Terpenoid synthases |Trichodiene synthase |Trichodiene synthase |Fusarium sporotrichioides [TaxId: 5514]
d3zlga1 : (ASP83) (LEU134) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 286636]
d2k40a_ : (THR9) (ARG58) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ttxa_ : (ASP60) (SER109) [view usage] : a.39.1.4 |EF Hand-like |EF-hand |Parvalbumin |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2nzaa_ : (GLY187) (GLY245) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |automated matches |Streptomyces coelicolor [TaxId: 100226]
d1iw7f3 : (LEU192) (ASP253) [view usage] : a.177.1.1 |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma70 |Thermus thermophilus [TaxId: 274]
d4i9oa_ : (LYS589) (CYS664) [view usage] : a.12.1.1 |Kix domain of CBP (creb binding protein) |Kix domain of CBP (creb binding protein) |Kix domain of CBP (creb binding protein) |Kix domain of CBP (creb binding protein) |Mouse (Mus musculus) [TaxId: 10090]
d1cpja_ : (SER28) (ARG85) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin B |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2aeka_ : (THR28) (LEU99) [view usage] : a.128.1.5 |Terpenoid synthases |Terpenoid synthases |Trichodiene synthase |Trichodiene synthase |Fusarium sporotrichioides [TaxId: 5514]
d3i4ka1 : (SER65) (ASN123) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d3rpha_ : (ASN206) (GLU276) [view usage] : c.72.1.4 |Ribokinase-like |Ribokinase-like |YjeF C-terminal domain-like |automated matches |Bacillus subtilis [TaxId: 1423]
d2w9ba1 : (GLY187) (ASP231) [view usage] : e.8.1.7 |DNA/RNA polymerases |DNA/RNA polymerases |Lesion bypass DNA polymerase (Y-family), catalytic domain |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d1v4ra1 : (TYR11) (ALA53) [view usage] : a.4.5.6 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |GntR-like transcriptional regulators |Transcriptional repressor TraR, N-terminal domain |Streptomyces sp. [TaxId: 1931]
d4i15a_ : (LEU641) (VAL708) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2k9na2 : (PRO58) (HIS104) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Trichomonas vaginalis [TaxId: 5722]
d1dp3a_ : (ASP10) (MET54) [view usage] : a.55.1.2 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |DNA-binding domain (fragment?) of the TraM protein |DNA-binding domain (fragment?) of the TraM protein |Escherichia coli [TaxId: 562]
d1zq9a1 : (THR237) (GLY309) [view usage] : c.66.1.24 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA adenine dimethylase-like |Probable dimethyladenosine transferase |Human (Homo sapiens) [TaxId: 9606]
d1r5za_ : (GLY78) (THR158) [view usage] : f.40.1.1 |V-type ATP synthase subunit C |V-type ATP synthase subunit C |V-type ATP synthase subunit C |V-type ATP synthase subunit C |Thermus thermophilus [TaxId: 274]
d3ucwa_ : (THR28) (LYS77) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Human (Homo sapiens) [TaxId: 9606]
d1tp4a_ : (LEU232) (GLU286) [view usage] : a.189.1.1 |XPC-binding domain |XPC-binding domain |XPC-binding domain |XPC-binding domain of Rad23 homolog A (Hhr23a) |Human (Homo sapiens) [TaxId: 9606]
d2woea_ : (ASN126) (GLY180) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 1085]
d2alga_ : (CYS3) (VAL58) [view usage] : a.52.1.1 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Plant lipid-transfer and hydrophobic proteins |automated matches |Prunus persica [TaxId: 3760]
d1veja1 : (LEU23) (LEU66) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |4931431F19Rik |Mouse (Mus musculus) [TaxId: 10090]
d4lrsa2 : (TYR295) (GLY346) [view usage] : a.5.7.0 |RuvA C-terminal domain-like |post-HMGL domain-like |automated matches |automated matches |Thermomonospora curvata [TaxId: 471852]
d1v19a_ : (PRO246) (ALA291) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |2-keto-3-deoxygluconate kinase |Thermus thermophilus [TaxId: 274]
d1e3ha1 : (ASP265) (LYS337) [view usage] : a.4.9.1 |DNA/RNA-binding 3-helical bundle |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |Streptomyces antibioticus [TaxId: 1890]
d1enha_ : (SER9) (ILE56) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Engrailed Homeodomain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4e4fd1 : (LEU41) (ILE86) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Pectobacterium carotovorum [TaxId: 561230]
d2f6la1 : (LEU39) (ASN119) [view usage] : a.130.1.4 |Chorismate mutase II |Chorismate mutase II |Secreted chorismate mutase-like |Secreted chorismate mutase |Mycobacterium tuberculosis [TaxId: 1773]
d2woca_ : (ASN126) (GLY180) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 1085]
d3g9da_ : (ASN126) (GLY180) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Azospirillum brasilense [TaxId: 192]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, a.104, a.128, c.66, a.211, c.72, f.20, d.3, a.4, a.39, a.55, d.54, a.116, a.28, a.209, a.130, a.52, a.204, a.177, a.5,
a.12, f.40, a.189