Tableau information
Concept source: d1bk5a_ amino acid (a.a.) range (GLU396)(ARG466)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU396) (SER412) H1
(ILE420) (GLN427) H2
(ILE430) (ALA440) H3
(ASN442) (ARG466) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -148.4° H2
H3 -127.9° 76.0° H3
H4 35.9° -112.7° -149.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1yona1 : (SER243) (SER290) [view usage] : a.100.1.7 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Ketopantoate reductase PanE |Ketopantoate reductase PanE |Escherichia coli [TaxId: 562]
d1n94b_ : (GLY249) (GLY319) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1r8ia_ : (TRP90) (GLY139) [view usage] : a.8.7.1 |immunoglobulin/albumin-binding domain-like |Typo IV secretion system protein TraC |Typo IV secretion system protein TraC |Typo IV secretion system protein TraC |Escherichia coli [TaxId: 562]
d4f2nb1 : (LEU26) (LEU115) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Leishmania major [TaxId: 5664]
d1k9xa_ : (ASN7) (ARG98) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Thermostable carboxypeptidase 1 |Pyrococcus furiosus [TaxId: 2261]
d1fc3c_ : (THR200) (ARG253) [view usage] : a.4.6.3 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |Spo0A |Spo0A |Bacillus stearothermophilus [TaxId: 1422]
d1fc3a_ : (THR200) (ARG253) [view usage] : a.4.6.3 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |Spo0A |Spo0A |Bacillus stearothermophilus [TaxId: 1422]
d3efpb_ : (HIS127) (LEU193) [view usage] : a.184.1.1 |TorD-like |TorD-like |TorD-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4h81a1 : (ASN89) (LEU180) [view usage] : a.29.5.0 |Bromodomain-like |alpha-ketoacid dehydrogenase kinase, N-terminal domain |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2cj8b_ : (GLY71) (ARG147) [view usage] : a.29.6.1 |Bromodomain-like |Plant invertase/pectin methylesterase inhibitor |Plant invertase/pectin methylesterase inhibitor |automated matches |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d4p6zb_ : (PRO135) (PRO192) [view usage] : a.118.1.10 |alpha-alpha superhelix |ARM repeat |Clathrin adaptor core protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4oiya_ : (THR829) (GLU884) [view usage] : a.118.3.0 |alpha-alpha superhelix |Sec7 domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1quua2 : (GLU125) (ALA247) [view usage] : a.7.1.1 |Spectrin repeat-like |Spectrin repeat |Spectrin repeat |alpha-actinin |Human (Homo sapiens) [TaxId: 9606]
d2jbwb_ : (THR40) (LEU109) [view usage] : c.69.1.41 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |2,6-dihydropseudooxynicotine hydrolase-like |2,6-dihydropseudooxynicotine hydrolase |Arthrobacter nicotinovorans [TaxId: 29320]
d3hq2b_ : (THR5) (PRO99) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1gjva1 : (PRO90) (LEU180) [view usage] : a.29.5.1 |Bromodomain-like |alpha-ketoacid dehydrogenase kinase, N-terminal domain |alpha-ketoacid dehydrogenase kinase, N-terminal domain |Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2gq0a_ : (THR343) (LEU399) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d4hi7a2 : (GLN129) (GLN194) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Drosophila mojavensis [TaxId: 7230]
d1dceb_ : (VAL239) (LEU301) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Rab geranylgeranyltransferase, beta subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2f76x_ : (GLN7) (GLU94) [view usage] : a.61.1.3 |Retroviral matrix proteins |Retroviral matrix proteins |Mason-Pfizer monkey virus matrix protein |Mason-Pfizer monkey virus matrix protein |Simian Mason-Pfizer virus [TaxId: 11855]
d1wfda_ : (SER10) (GLY86) [view usage] : a.7.14.1 |Spectrin repeat-like |MIT domain |MIT domain |Hypothetical protein 1500032H18Rik |Mouse (Mus musculus) [TaxId: 10090]
d1ez3a_ : (ASP27) (ARG148) [view usage] : a.47.2.1 |STAT-like |t-snare proteins |t-snare proteins |Syntaxin 1A N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1euba_ : (ASN215) (GLY267) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Collagenase-3 (MMP-13) |Human (Homo sapiens) [TaxId: 9606]
d3efpa_ : (HIS127) (LEU193) [view usage] : a.184.1.1 |TorD-like |TorD-like |TorD-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1m9ia2 : (THR545) (LYS598) [view usage] : a.65.1.1 |Annexin |Annexin |Annexin |Annexin VI |Cow (Bos taurus) [TaxId: 9913]
d1wgza_ : (THR2) (ALA99) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3rzna_ : (GLY21) (GLY114) [view usage] : a.224.1.1 |Glycolipid transfer protein, GLTP |Glycolipid transfer protein, GLTP |Glycolipid transfer protein, GLTP |Glycolipid transfer protein, GLTP |Human (Homo sapiens) [TaxId: 9606]
d2c1ta_ : (ASN442) (GLY510) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3afha2 : (ASP316) (ILE379) [view usage] : a.97.1.0 |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d1v66a_ : (ALA5) (PHE65) [view usage] : a.140.2.1 |LEM/SAP HeH motif |SAP domain |SAP domain |p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 |Human (Homo sapiens) [TaxId: 9606]
d3tk8c_ : (SER39) (GLU108) [view usage] : b.81.1.2 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d2c6fa_ : (ASP13) (THR97) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2oeba1 : (LEU51) (MET150) [view usage] : a.70.2.1 |ATPD N-terminal domain-like |AF1862-like |Cas Cmr5-like |Hypothetical protein AF1862 |Archaeoglobus fulgidus [TaxId: 2234]
d3d0ga_ : (THR20) (GLN101) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme 2, ACE2 |Paguma larvata
d1td6a_ : (ASP118) (ILE169) [view usage] : a.234.1.1 |Hypothetical protein MPN330 |Hypothetical protein MPN330 |Hypothetical protein MPN330 |Hypothetical protein MPN330 |Mycoplasma pneumoniae [TaxId: 2104]
d1hs7a_ : (ASN24) (LEU115) [view usage] : a.47.2.1 |STAT-like |t-snare proteins |t-snare proteins |Vam3p N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4h7qa1 : (ASN89) (LEU180) [view usage] : a.29.5.0 |Bromodomain-like |alpha-ketoacid dehydrogenase kinase, N-terminal domain |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3cw0a_ : (HIS127) (LEU193) [view usage] : a.184.1.1 |TorD-like |TorD-like |TorD-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1aowa_ : (LEU193) (ARG243) [view usage] : a.65.1.1 |Annexin |Annexin |Annexin |Annexin IV |Cow (Bos taurus) [TaxId: 9913]
d2i6hb_ : (GLY57) (ALA120) [view usage] : a.118.8.5 |alpha-alpha superhelix |TPR-like |Atu0120-like |Hypothetical protein Atu0120 |Agrobacterium tumefaciens [TaxId: 358]
d1rwaa1 : (THR304) (THR365) [view usage] : a.102.3.2 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Hyaluronate lyase-like catalytic, N-terminal domain |Chondroitinase AC |Arthrobacter aurescens [TaxId: 43663]
d3dssb_ : (ALA191) (ILE252) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Rab geranylgeranyltransferase, beta subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2pf4b_ : (LEU283) (ASP336) [view usage] : a.118.1.2 |alpha-alpha superhelix |ARM repeat |HEAT repeat |Constant regulatory domain of protein phosphatase 2a, pr65alpha |Mouse (Mus musculus) [TaxId: 10090]
d2evsa_ : (THR20) (GLY114) [view usage] : a.224.1.1 |Glycolipid transfer protein, GLTP |Glycolipid transfer protein, GLTP |Glycolipid transfer protein, GLTP |Glycolipid transfer protein, GLTP |Human (Homo sapiens) [TaxId: 9606]
d2e2aa_ : (ASN2) (ALA104) [view usage] : a.7.2.1 |Spectrin repeat-like |Enzyme IIa from lactose specific PTS, IIa-lac |Enzyme IIa from lactose specific PTS, IIa-lac |Enzyme IIa from lactose specific PTS, IIa-lac |Lactococcus lactis [TaxId: 1358]
d3nxqb_ : (ASP13) (THR97) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1serb1 : (ASP503) (VAL601) [view usage] : a.2.7.1 |Long alpha-hairpin |tRNA-binding arm |Seryl-tRNA synthetase (SerRS) |Seryl-tRNA synthetase (SerRS) |Thermus thermophilus, strain hb27 [TaxId: 274]
d3bx3b_ : (THR626) (SER672) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4e01a1 : (ASN89) (LEU180) [view usage] : a.29.5.0 |Bromodomain-like |alpha-ketoacid dehydrogenase kinase, N-terminal domain |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, b.81, a.118, a.102, d.92, a.65, d.14, a.100, a.4, a.45, a.224, a.29, a.61, a.8, a.7, a.184, a.2, a.47, a.97, a.140,
a.70, a.234