Tableau information
Concept source: d1rqfa_ amino acid (a.a.) range (ASP32)(GLY104)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP32) (THR37) H1
(HIS45) (LEU54) H2
(ASP70) (THR90) H3
(THR90) (GLY104) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 130.8° H2
H3 97.4° -68.9° H3
H4 -75.5° 59.5° -93.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3dw8a_ : (ILE547) (VAL585) [view usage] : a.118.1.2 |alpha-alpha superhelix |ARM repeat |HEAT repeat |Constant regulatory domain of protein phosphatase 2a, pr65alpha |Human (Homo sapiens) [TaxId: 9606]
d3iwrb_ : (PHE208) (GLY261) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Oryza sativa [TaxId: 39947]
d4wg2a_ : (SER142) (ASP199) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d2a8ea1 : (THR7) (GLY50) [view usage] : d.296.1.1 |YktB/PF0168-like |YktB/PF0168-like |YktB-like |Hypothetical protein YktB |Bacillus subtilis [TaxId: 1423]
d2uwha_ : (PRO142) (ASP195) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d3b0wb_ : (ARG437) (GLU481) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rqfa_ : (ASP32) (GLY104) [view usage] : g.41.4.1 |Rubredoxin-like |Casein kinase II beta subunit |Casein kinase II beta subunit |Casein kinase II beta subunit |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1vgpa_ : (ASN308) (ASN350) [view usage] : a.103.1.0 |Citrate synthase |Citrate synthase |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 111955]
d3v3qb1 : (GLU189) (LEU265) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor NR4A1 |Human (Homo sapiens) [TaxId: 9606]
d3prod1 : (ASP5) (GLY45) [view usage] : d.52.1.1 |Alpha-lytic protease prodomain-like |Alpha-lytic protease prodomain |Alpha-lytic protease prodomain |Alpha-lytic protease prodomain |Lysobacter enzymogenes [TaxId: 69]
d2g5cb1 : (THR232) (LYS253) [view usage] : a.100.1.12 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |TyrA dimerization domain-like |Prephenate dehydrogenase TyrA |Aquifex aeolicus [TaxId: 63363]
d3npla_ : (PRO142) (PRO196) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d1ezja_ : (THR4) (HIS111) [view usage] : h.1.14.1 |Parallel coiled-coil |Multimerization domain of the phosphoprotein from sendai virus |Multimerization domain of the phosphoprotein from sendai virus |Multimerization domain of the phosphoprotein from sendai virus |Sendai virus [TaxId: 11191]
d4dwxa_ : (HIS121) (GLY174) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Secale cereale [TaxId: 4550]
d1visa2 : (LYS199) (ARG266) [view usage] : d.58.26.3 |Ferredoxin-like |GHMP Kinase, C-terminal domain |Mevalonate kinase |Mevalonate kinase |Methanococcus jannaschii [TaxId: 2190]
d3nv6a_ : (SER83) (ASN121) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Novosphingobium aromaticivorans [TaxId: 279238]
d4d08d1 : (ASN627) (LEU681) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hrua1 : (LEU3) (LEU45) [view usage] : d.79.4.1 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |PurM N-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 |Thermotoga maritima [TaxId: 2336]
d2hs0a1 : (LYS2) (LEU45) [view usage] : d.79.4.1 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |PurM N-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 |Thermotoga maritima [TaxId: 2336]
d1szha_ : (THR21) (GLN97) [view usage] : a.226.1.1 |Her-1 |Her-1 |Her-1 |Her-1 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d4jibd_ : (ASN627) (LEU681) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ycix_ : (GLY197) (LYS263) [view usage] : c.1.21.2 |TIM beta/alpha-barrel |Dihydropteroate synthetase-like |Methyltetrahydrofolate-utiluzing methyltransferases |automated matches |Carboxydothermus hydrogenoformans [TaxId: 246194]
d1f81a_ : (SER1) (LYS87) [view usage] : g.53.1.1 |TAZ domain |TAZ domain |TAZ domain |CREB-binding transcriptional adaptor protein CBP (p300) |Mouse (Mus musculus) [TaxId: 10090]
d2c1va1 : (PRO144) (LEU177) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Paracoccus pantotrophus [TaxId: 82367]
d1vk3a1 : (LEU3) (LEU45) [view usage] : d.79.4.1 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |PurM N-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 |Thermotoga maritima [TaxId: 2336]
d3poma1 : (VAL456) (LEU506) [view usage] : a.74.1.3 |Cyclin-like |Cyclin-like |Retinoblastoma tumor suppressor domains |Retinoblastoma tumor suppressor domains |Human (Homo sapiens) [TaxId: 9606]
d3r7la2 : (ASN253) (LEU289) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d4ky0c_ : (GLY362) (ILE429) [view usage] : f.49.1.1 |Proton glutamate symport protein |Proton glutamate symport protein |Proton glutamate symport protein |automated matches |Thermococcus kodakarensis [TaxId: 69014]
d1mbsa_ : (ASP4) (PHE43) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Myoglobin |Common seal (Phoca vitulina) [TaxId: 9720]
d1kkha2 : (THR205) (GLY273) [view usage] : d.58.26.3 |Ferredoxin-like |GHMP Kinase, C-terminal domain |Mevalonate kinase |Mevalonate kinase |Methanococcus jannaschii [TaxId: 2190]
d1ow3a_ : (THR191) (PHE234) [view usage] : a.116.1.1 |GTPase activation domain, GAP |GTPase activation domain, GAP |BCR-homology GTPase activation domain (BH-domain) |p50 RhoGAP domain |Human (Homo sapiens) [TaxId: 9606]
d1tx4a_ : (THR191) (PHE234) [view usage] : a.116.1.1 |GTPase activation domain, GAP |GTPase activation domain, GAP |BCR-homology GTPase activation domain (BH-domain) |p50 RhoGAP domain |Human (Homo sapiens) [TaxId: 9606]
d4h24a_ : (SER142) (ASP195) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d3ljta_ : (SER423) (LEU475) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ig6a_ : (ARG1) (ARG54) [view usage] : a.4.3.1 |DNA/RNA-binding 3-helical bundle |ARID-like |ARID domain |MRF-2 DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1hqmc_ : (ASP203) (LEU242) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits |Thermus aquaticus [TaxId: 271]
d2q62a_ : (SER191) (GLU227) [view usage] : c.23.5.4 |Flavodoxin-like |Flavoproteins |NADPH-dependent FMN reductase |automated matches |Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]
d3proc1 : (PRO6) (GLY45) [view usage] : d.52.1.1 |Alpha-lytic protease prodomain-like |Alpha-lytic protease prodomain |Alpha-lytic protease prodomain |Alpha-lytic protease prodomain |Lysobacter enzymogenes [TaxId: 69]
d1tcob_ : (ASN138) (MET165) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calcineurin regulatory subunit (B-chain) |Cow (Bos taurus) [TaxId: 9913]
d2yckx_ : (GLY197) (GLN262) [view usage] : c.1.21.2 |TIM beta/alpha-barrel |Dihydropteroate synthetase-like |Methyltetrahydrofolate-utiluzing methyltransferases |automated matches |Carboxydothermus hydrogenoformans [TaxId: 246194]
d1fyza_ : (ASP196) (TYR266) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d1deoa_ : (ASP168) (VAL222) [view usage] : c.23.10.4 |Flavodoxin-like |SGNH hydrolase |Rhamnogalacturonan acetylesterase |Rhamnogalacturonan acetylesterase |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d2pv4a1 : (MSE1) (LEU66) [view usage] : a.286.1.1 |Sama2622-like |Sama2622-like |Sama2622-like |Uncharacterized protein Sama2622 |Shewanella amazonensis [TaxId: 60478]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, a.104, d.58, a.118, d.92, a.211, c.23, a.103, d.2, a.123, c.78, a.25, d.79, a.1, a.100, a.4, a.39, a.3, a.74, i.8,
a.116, d.52, g.41, a.286, f.49, d.296, h.1, a.226, g.53