Tableau information
Concept source: d2zira_ amino acid (a.a.) range (TYR292)(SER368)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR292) (GLN303) H1
(TYR310) (ASN325) H2
(ASN329) (GLU347) H3
(LYS353) (SER368) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -151.1° H2
H3 41.8° -151.7° H3
H4 -136.7° 20.2° -166.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3dpyb1 : (THR225) (GLY319) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1o5ha_ : (GLU56) (TRP199) [view usage] : a.191.1.1 |Methenyltetrahydrofolate cyclohydrolase-like |Methenyltetrahydrofolate cyclohydrolase-like |Methenyltetrahydrofolate cyclohydrolase-like |Hypothetical protein TM1560 |Thermotoga maritima [TaxId: 2336]
d1g6wc1 : (LEU206) (TYR297) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Yeast prion protein ure2p, nitrogen regulation fragment |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jcqa_ : (ASN294) (SER365) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Human (Homo sapiens) [TaxId: 9606]
d1st6a8 : (PRO897) (GLY1007) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |Vinculin |Chicken (Gallus gallus) [TaxId: 9031]
d1xnfb_ : (SER211) (ASP284) [view usage] : a.118.8.1 |alpha-alpha superhelix |TPR-like |Tetratricopeptide repeat (TPR) |Lipoprotein NlpI |Escherichia coli [TaxId: 562]
d1n95b_ : (THR225) (GLY319) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2gscd_ : (PRO35) (ALA121) [view usage] : a.29.16.1 |Bromodomain-like |IVS-encoded protein-like |IVS-encoded protein-like |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
d1o5hb_ : (GLU56) (TRP199) [view usage] : a.191.1.1 |Methenyltetrahydrofolate cyclohydrolase-like |Methenyltetrahydrofolate cyclohydrolase-like |Methenyltetrahydrofolate cyclohydrolase-like |Hypothetical protein TM1560 |Thermotoga maritima [TaxId: 2336]
d1pfra_ : (GLY152) (GLU267) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Escherichia coli [TaxId: 562]
d1fppa_ : (ASN294) (LYS366) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2zira_ : (TYR292) (SER368) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3h2ua_ : (GLN896) (LEU1006) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g6ya1 : (ASP205) (TYR297) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Yeast prion protein ure2p, nitrogen regulation fragment |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ghab_ : (VAL122) (GLY205) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1ft1a_ : (ASN294) (SER368) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4hx3e_ : (ASP68) (TRP129) [view usage] : d.92.1.1 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zinc protease |automated matches |Streptomyces caespitosus [TaxId: 53502]
d1oxza_ : (ASP171) (GLU302) [view usage] : a.7.8.1 |Spectrin repeat-like |GAT-like domain |GAT domain |ADP-ribosylation factor binding protein Gga1 |Human (Homo sapiens) [TaxId: 9606]
d1z7mb_ : (LEU192) (LEU250) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Lactococcus lactis [TaxId: 1358]
d1d8da_ : (LEU302) (SER368) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2grmc2 : (LEU207) (LYS288) [view usage] : a.118.8.4 |alpha-alpha superhelix |TPR-like |PrgX C-terminal domain-like |automated matches |Enterococcus faecalis [TaxId: 1351]
d1k1xa1 : (TRP313) (ARG382) [view usage] : a.8.3.2 |immunoglobulin/albumin-binding domain-like |Families 57/38 glycoside transferase middle domain |4-alpha-glucanotransferase, domain 2 |4-alpha-glucanotransferase, domain 2 |Thermococcus litoralis [TaxId: 2265]
d1e1da_ : (GLY135) (GLY222) [view usage] : e.26.1.1 |Prismane protein-like |Prismane protein-like |Hybrid cluster protein (prismane protein) |Hybrid cluster protein (prismane protein) |Desulfovibrio vulgaris [TaxId: 881]
d1dkyb1 : (ASN508) (GLU590) [view usage] : a.8.4.1 |immunoglobulin/albumin-binding domain-like |Heat shock protein 70kD (HSP70), C-terminal subdomain |Heat shock protein 70kD (HSP70), C-terminal subdomain |DnaK |Escherichia coli [TaxId: 562]
d1r3ba_ : (LEU40) (GLN164) [view usage] : a.29.7.1 |Bromodomain-like |Mob1/phocein |Mob1/phocein |Mob1a |African clawed frog (Xenopus laevis) [TaxId: 8355]
d4be8a_ : (PHE659) (TRP738) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3vf0a_ : (GLN963) (ARG1075) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |Vinculin |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94, a.118, a.102, d.92, d.104, a.25, e.26, a.45, a.29, d.148, a.24, a.8, a.7, a.191