Tableau information
Concept source: d4je9a_ amino acid (a.a.) range (ASP2)(ALA43)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP2) (ASP12) H1
(ASN13) (LYS19) H2
(ALA23) (ALA40) H3
(ALA40) (ALA43) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -7.1° H2
H3 -159.6° -162.3° H3
H4 -115.9° -121.3° -45.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3ocea_ : (THR140) (SER253) [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d1qu7b_ : (ALA300) (GLN520) [view usage] : h.4.5.1 |Antiparallel coiled-coil |Methyl-accepting chemotaxis protein (MCP) signaling domain |Methyl-accepting chemotaxis protein (MCP) signaling domain |Cytoplasmic domain of a serine chemotaxis receptor |Escherichia coli [TaxId: 562]
d3k5ma2 : (ASP434) (PHE511) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Escherichia coli [TaxId: 562]
d1rp4a_ : (ASP353) (ARG427) [view usage] : a.227.1.1 |ERO1-like |ERO1-like |ERO1-like |Endoplasmic oxidoreductin 1, Ero1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3dw8a_ : (ALA296) (ASP336) [view usage] : a.118.1.2 |alpha-alpha superhelix |ARM repeat |HEAT repeat |Constant regulatory domain of protein phosphatase 2a, pr65alpha |Human (Homo sapiens) [TaxId: 9606]
d4d8fd_ : (GLU176) (THR250) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Chlamydia trachomatis [TaxId: 813]
d4n4ne_ : (ASP231) (LYS262) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Nitrosomonas europaea [TaxId: 915]
d3c02a_ : (SER8) (GLY66) [view usage] : f.19.1.0 |Aquaporin-like |Aquaporin-like |automated matches |automated matches |Plasmodium falciparum
d2dtud2 : (VAL470) (ASN572) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d3ldsa2 : (VAL470) (LEU570) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d3suqa2 : (PRO738) (LEU774) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d4h3zb_ : (ASP154) (GLY178) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
d3cbba_ : (CYS68) (GLN122) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4bzsb_ : (ASP13) (ASN82) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4mcaa_ : (THR196) (GLY249) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Serratia plymuthica [TaxId: 1206776]
d4je9a_ : (ASP2) (ALA43) [view usage] : a.24.3.1 |Four-helical up-and-down bundle |Cytochromes |Cytochrome b562 |automated matches |Escherichia coli [TaxId: 562]
d2zi9a_ : (SER129) (GLU171) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Deoxycytidine kinase |Human (Homo sapiens) [TaxId: 9606]
d3ncba_ : (GLN77) (PRO139) [view usage] : a.26.1.1 |4-helical cytokines |4-helical cytokines |Long-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n8va_ : (ASP6) (ASN53) [view usage] : a.118.21.1 |alpha-alpha superhelix |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Cabbage moth (Mamestra brassicae) [TaxId: 55057]
d4d8fb_ : (SER174) (THR250) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Chlamydia trachomatis [TaxId: 813]
d3mzga_ : (GLN77) (THR141) [view usage] : a.26.1.1 |4-helical cytokines |4-helical cytokines |Long-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lqsl_ : (GLY61) (LYS131) [view usage] : a.26.1.3 |4-helical cytokines |4-helical cytokines |Interferons/interleukin-10 (IL-10) |Interleukin-10 (cytokine synthesis inhibitory factor, CSIF) |Human herpesvirus 5 [TaxId: 10359]
d3nk5a_ : (ASN186) (GLU228) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1n8ua_ : (ASP6) (ASN53) [view usage] : a.118.21.1 |alpha-alpha superhelix |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Cabbage moth (Mamestra brassicae) [TaxId: 55057]
d2f93a_ : (SER153) (GLU222) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d2axta1 : (GLY110) (GLN165) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Photosystem Q(B) protein 1, PsbA1 |Thermosynechococcus elongatus [TaxId: 146786]
d1zl8b1 : (SER106) (VAL154) [view usage] : a.194.1.1 |L27 domain |L27 domain |L27 domain |Peripheral plasma membrane protein cask |Human (Homo sapiens) [TaxId: 9606]
d2qfvb_ : (SER331) (GLY384) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2b9zb_ : (LYS4) (GLU70) [view usage] : a.30.8.1 |ROP-like |FHV B2 protein-like |FHV B2 protein-like |B2 |Flock house virus, FHV [TaxId: 12287]
d3atpa_ : (ILE125) (TYR189) [view usage] : a.24.2.0 |Four-helical up-and-down bundle |Aspartate receptor, ligand-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 316407]
d4p8qa4 : (PRO764) (GLN806) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kqfb_ : (GLY205) (LYS254) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3nk5b_ : (ASN186) (LEU227) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1itza1 : (GLU14) (VAL56) [view usage] : c.36.1.10 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |TK-like PP module |Transketolase (TK), PP module |Maize (Zea mays) [TaxId: 4577]
d1y6nl1 : (GLY61) (ASN116) [view usage] : a.26.1.3 |4-helical cytokines |4-helical cytokines |Interferons/interleukin-10 (IL-10) |Interleukin-10 (cytokine synthesis inhibitory factor, CSIF) |Epstein-Barr virus [TaxId: 10376]
d2o9fa_ : (ASN186) (LEU227) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |Aquaporin Z |Escherichia coli [TaxId: 562]
d1d1da2 : (ASN102) (LEU146) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |RSV capsid protein |Rous sarcoma virus [TaxId: 11886]
d4nkgb_ : (VAL128) (LEU188) [view usage] : a.2.6.1 |Long alpha-hairpin |HR1 repeat |HR1 repeat |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wa8a1 : (ASP6) (LEU93) [view usage] : a.25.3.1 |Ferritin-like |EsxAB dimer-like |ESAT-6 like |ESAT-6 like protein EsxB |Mycobacterium tuberculosis [TaxId: 1773]
d4fasa_ : (LEU206) (LYS238) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Nitrosomonas europaea [TaxId: 228410]
d4llsa_ : (SER129) (GLN195) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Roseobacter denitrificans [TaxId: 375451]
d1n8vb_ : (ASP6) (ASN53) [view usage] : a.118.21.1 |alpha-alpha superhelix |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Cabbage moth (Mamestra brassicae) [TaxId: 55057]
d4llsb_ : (SER129) (GLN195) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Roseobacter denitrificans [TaxId: 375451]
d2pkga1 : (GLU50) (GLY81) [view usage] : a.118.1.2 |alpha-alpha superhelix |ARM repeat |HEAT repeat |Constant regulatory domain of protein phosphatase 2a, pr65alpha |Human (Homo sapiens) [TaxId: 9606]
d2q98a_ : (GLN77) (LYS142) [view usage] : a.26.1.1 |4-helical cytokines |4-helical cytokines |Long-chain cytokines |Prolactin (placental lactogen) |Human (Homo sapiens) [TaxId: 9606]
d3g9oa_ : (CYS457) (LYS511) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Glucocorticoid receptor DNA-binding domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, a.118, a.128, d.92, c.77, c.14, a.127, e.22, c.37, c.36, f.26, a.25, c.116, f.13, a.138, f.19, a.73, a.24, a.26, h.4,
a.2, g.39, a.227, a.194, a.30