Tableau information
Concept source: d1w98b1 amino acid (a.a.) range (PRO280)(GLY327)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO280) (SER293) H1
(SER294) (GLY303) H2
(GLN305) (MET316) H3
(MET316) (GLY327) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 148.0° H2
H3 -79.4° 116.4° H3
H4 -41.1° 117.6° -64.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ofcx1 : (LYS802) (GLN850) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |SANT domain of the nucleosome remodeling ATPase ISWI |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2oqra2 : (LEU156) (VAL216) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2hhwa2 : (THR698) (GLY761) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
d1wvua_ : (SER94) (THR148) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Streptomyces griseus [TaxId: 1911]
d4m1ia_ : (GLY215) (LYS326) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Chlamydia trachomatis [TaxId: 813]
d2q01b_ : (GLY406) (LYS469) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Caulobacter vibrioides [TaxId: 190650]
d3nara_ : (THR668) (ALA729) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Zinc fingers and homeoboxes protein 1, ZHX1 |Human (Homo sapiens) [TaxId: 9606]
d2jn6a1 : (GLU8) (HIS51) [view usage] : a.4.1.19 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Cgl2762-like |Uncharacterized protein Cgl2762 |Corynebacterium glutamicum [TaxId: 1718]
d1leha1 : (PRO282) (ARG350) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Leucine dehydrogenase |Bacillus sphaericus [TaxId: 1421]
d2o3ea_ : (ASN547) (GLY604) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4n83b_ : (LEU177) (GLY284) [view usage] : a.25.1.0 |Ferritin-like |Ferritin-like |automated matches |automated matches |Streptococcus sanguinis [TaxId: 388919]
d1mmod_ : (HIS96) (VAL187) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d1uzrb_ : (LEU183) (LEU291) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Mycobacterium tuberculosis [TaxId: 1773]
d2xzmv_ : (LYS7) (ASP83) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2ezha_ : (ASP183) (ARG240) [view usage] : a.4.1.2 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Recombinase DNA-binding domain |Transposase |Bacteriophage Mu [TaxId: 10677]
d1w98b1 : (PRO280) (GLY327) [view usage] : a.74.1.1 |Cyclin-like |Cyclin-like |Cyclin |G1/S-specific cyclin-E1 |Human (Homo sapiens) [TaxId: 9606]
d1h19a3 : (THR310) (TYR378) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Leukotriene A4 hydrolase catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1g6ya1 : (ILE308) (ALA350) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Yeast prion protein ure2p, nitrogen regulation fragment |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2igsf_ : (PRO10) (LYS85) [view usage] : d.2.1.11 |Lysozyme-like |Lysozyme-like |PA2222-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1u2na_ : (ASP346) (SER436) [view usage] : g.53.1.1 |TAZ domain |TAZ domain |TAZ domain |CREB-binding transcriptional adaptor protein CBP (p300) |Mouse (Mus musculus) [TaxId: 10090]
d1lfup_ : (ASN9) (THR74) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |pbx1 |Mouse (Mus musculus) [TaxId: 10090]
d1ma9a3 : (GLY387) (ASN456) [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Vitamin D binding protein |Human (Homo sapiens) [TaxId: 9606]
d1iw7f3 : (ASP123) (ALA190) [view usage] : a.177.1.1 |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma70 |Thermus thermophilus [TaxId: 274]
d1j78b3 : (GLY387) (LYS455) [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Vitamin D binding protein |Human (Homo sapiens) [TaxId: 9606]
d2ecca_ : (THR11) (ASP68) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Homeobox-leucine zipper protein Homez |Human (Homo sapiens) [TaxId: 9606]
d4bmoa_ : (LEU181) (ARG288) [view usage] : a.25.1.0 |Ferritin-like |Ferritin-like |automated matches |automated matches |Bacillus cereus [TaxId: 1396]
d1a5ja2 : (GLU64) (VAL108) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |b-Myb DNA binding domain |Chicken (Gallus gallus) [TaxId: 9031]
d2ga1b_ : (PRO52) (GLN101) [view usage] : a.4.1.16 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Alr1493-like |Hypothetical protein Ava_0674 (Alr1493 orthologue) |Anabaena variabilis [TaxId: 1172]
d2r2fa_ : (LEU178) (LEU286) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Salmonella typhimurium [TaxId: 90371]
d3d0ga_ : (GLU433) (ASP509) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme 2, ACE2 |Paguma larvata
d2ckxa1 : (SER581) (GLN660) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |Telomere binding protein TBP1 |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d2uxxb2 : (THR384) (GLU440) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |REST corepressor 1, CoREST |Human (Homo sapiens) [TaxId: 9606]
d1fz2b_ : (HIS96) (VAL187) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d2h85a2 : (SER207) (SER258) [view usage] : d.294.1.2 |EndoU-like |EndoU-like |Nsp15 C-terminal domain-like |Nsp15, C-terminal domain |SARS coronavirus [TaxId: 227859]
d1ej6d_ : (GLN331) (LEU417) [view usage] : i.7.1.1 |Reovirus components |Reovirus components |Reovirus components |Reovirus core |Reovirus sp. [TaxId: 10891]
d2qhbb_ : (VAL582) (TRP657) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |Telomere binding protein TBP1 |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d1r8ub_ : (GLU348) (LYS419) [view usage] : g.53.1.1 |TAZ domain |TAZ domain |TAZ domain |CREB-binding transcriptional adaptor protein CBP (p300) |Mouse (Mus musculus) [TaxId: 10090]
d4naxb2 : (PHE186) (ILE229) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Pseudomonas putida [TaxId: 351746]
d3scka_ : (GLU433) (ASP509) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme 2, ACE2 |Paguma larvata
d2igsb_ : (PRO10) (LYS85) [view usage] : d.2.1.11 |Lysozyme-like |Lysozyme-like |PA2222-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3fr3a2 : (TYR157) (ARG203) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2mgqa_ : (ARG14) (TYR60) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1fyza_ : (HIS96) (VAL187) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d2l7mp_ : (THR9) (ARG59) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1eoia_ : (SER148) (HIS228) [view usage] : a.111.1.1 |Acid phosphatase/Vanadium-dependent haloperoxidase |Acid phosphatase/Vanadium-dependent haloperoxidase |Type 2 phosphatidic acid phosphatase, PAP2 |Bacterial acid phosphatase |Escherichia blattae [TaxId: 563]
d1homa_ : (THR9) (ASN60) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Antennapedia Homeodomain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.2, i.1, d.92, d.2, a.126, a.25, a.4, a.45, a.111, a.74, a.177, g.53, d.294, i.7