Tableau information
Concept source: d1a7da_ amino acid (a.a.) range (SER40)(LYS115)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER40) (LYS66) H1
(VAL71) (LEU87) H2
(ALA93) (ASN105) H3
(HIS106) (LYS115) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -168.2° H2
H3 23.8° -157.9° H3
H4 25.7° -147.1° -20.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1kgza1 : (HIS13) (GLY59) [view usage] : a.46.2.1 |Methionine synthase domain-like |Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |Anthranilate phosphoribosyltransferase (TrpD) |Pectobacterium carotovorum [TaxId: 554]
d1hy1b_ : (ARG236) (ALA341) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d1g8xa_ : (THR852) (HIS1010) [view usage] : k.1.1.1 |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Genetically engineered molecular motor |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d2ahmd_ : (SER6) (MET67) [view usage] : a.8.9.1 |immunoglobulin/albumin-binding domain-like |Coronavirus NSP7-like |Coronavirus NSP7-like |automated matches |SARS coronavirus [TaxId: 227859]
d3nf4b2 : (GLY235) (GLY343) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1797]
d3omic_ : (VAL273) (TRP371) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |automated matches |Rhodobacter sphaeroides [TaxId: 272943]
d4npfx2 : (ASN106) (ALA156) [view usage] : a.8.1.1 |immunoglobulin/albumin-binding domain-like |Bacterial immunoglobulin/albumin-binding domains |Immunoglobulin-binding protein A modules |automated matches |Staphylococcus aureus [TaxId: 1280]
d4mf5a2 : (ASP108) (GLU198) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Burkholderia graminis [TaxId: 396598]
d4naxa2 : (PRO109) (ASN197) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Pseudomonas putida [TaxId: 351746]
d2fusa_ : (ASP272) (ILE391) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Fumarase |Escherichia coli [TaxId: 562]
d4j2fa2 : (PRO88) (HIS163) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Castor bean (Ricinus communis) [TaxId: 3988]
d1klna1 : (THR442) (LYS518) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of prokaryotic DNA polymerase |Escherichia coli [TaxId: 562]
d3ii9a2 : (LEU243) (LEU349) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d2knha_ : (GLY-2) (ASN322) [view usage] : a.277.1.1 |TAFH domain-like |TAFH domain-like |TAFH domain-like |ETO |Human (Homo sapiens) [TaxId: 9606]
d4doda_ : (ASP299) (LEU376) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |CelA cellulase |Caldicellulosiruptor bescii [TaxId: 31899]
d1s51a_ : (THR89) (ARG164) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
d4g7sa_ : (SER64) (SER155) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d1e7pa1 : (ASP462) (ARG540) [view usage] : a.7.3.1 |Spectrin repeat-like |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Fumarate reductase |Wolinella succinogenes [TaxId: 844]
d3f6fa2 : (VAL88) (ALA170) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1kq7a_ : (CYS271) (CYS387) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Fumarase |Escherichia coli [TaxId: 562]
d1yy7b2 : (PRO93) (GLY172) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d1deeh_ : (ASN2804) (GLN2853) [view usage] : a.8.1.1 |immunoglobulin/albumin-binding domain-like |Bacterial immunoglobulin/albumin-binding domains |Immunoglobulin-binding protein A modules |Immunoglobulin-binding protein A modules |Staphylococcus aureus [TaxId: 1280]
d4npda_ : (LYS7) (GLN55) [view usage] : a.8.1.1 |immunoglobulin/albumin-binding domain-like |Bacterial immunoglobulin/albumin-binding domains |Immunoglobulin-binding protein A modules |automated matches |Staphylococcus aureus [TaxId: 1280]
d1mmog_ : (ASP10) (ARG70) [view usage] : a.23.3.1 |Open three-helical up-and-down bundle |Methane monooxygenase hydrolase, gamma subunit |Methane monooxygenase hydrolase, gamma subunit |Methane monooxygenase hydrolase, gamma subunit |Methylococcus capsulatus [TaxId: 414]
d4npfx1 : (LYS7) (GLN55) [view usage] : a.8.1.1 |immunoglobulin/albumin-binding domain-like |Bacterial immunoglobulin/albumin-binding domains |Immunoglobulin-binding protein A modules |automated matches |Staphylococcus aureus [TaxId: 1280]
d1h2sa_ : (THR80) (SER150) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d1lf6a1 : (LEU602) (GLU668) [view usage] : a.102.1.5 |alpha/alpha toroid |Six-hairpin glycosidases |Bacterial glucoamylase C-terminal domain-like |Bacterial glucoamylase, C-terminal domain |Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
d1sjja_ : (GLN271) (ASP412) [view usage] : i.15.1.1 |Muscle protein complexes |Muscle protein complexes |Muscle protein complexes |Actinin |Chicken (Gallus gallus) [TaxId: 9031]
d3k1sa_ : (THR3) (LYS105) [view usage] : a.7.2.0 |Spectrin repeat-like |Enzyme IIa from lactose specific PTS, IIa-lac |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1z8uc_ : (LYS5) (SER91) [view usage] : a.7.11.1 |Spectrin repeat-like |Alpha-hemoglobin stabilizing protein AHSP |Alpha-hemoglobin stabilizing protein AHSP |Alpha-hemoglobin stabilizing protein AHSP |Human (Homo sapiens) [TaxId: 9606]
d2f93a_ : (THR80) (SER150) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d1xmea_ : (TYR66) (ALA173) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d1u8va1 : (GLU277) (ILE387) [view usage] : a.29.3.1 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |Medium chain acyl-CoA dehydrogenase-like, C-terminal domain |4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain |Clostridium aminobutyricum [TaxId: 33953]
d3mkha2 : (ALA263) (GLY375) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Podospora anserina [TaxId: 5145]
d2j4bd_ : (LYS38) (ILE89) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |automated matches |Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
d4a64a_ : (ILE362) (GLN440) [view usage] : a.118.17.0 |alpha-alpha superhelix |Cullin repeat-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xs8a_ : (GLY24) (GLU76) [view usage] : d.279.1.1 |YggX-like |YggX-like |YggX-like |Hypothetical protein YggX |Salmonella typhimurium [TaxId: 90371]
d3apca3 : (PHE578) (SER620) [view usage] : a.118.1.6 |alpha-alpha superhelix |ARM repeat |Phoshoinositide 3-kinase (PI3K) helical domain |Phoshoinositide 3-kinase (PI3K) helical domain |Human (Homo sapiens) [TaxId: 9606]
d1cpya_ : (PRO181) (GLY252) [view usage] : c.69.1.5 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Serine carboxypeptidase-like |Serine carboxypeptidase II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ebfx1 : (GLU674) (ALA725) [view usage] : a.296.1.1 |PMT central region-like |PMT central region-like |PMT central region-like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d1t72g_ : (GLY5) (ALA112) [view usage] : a.7.12.1 |Spectrin repeat-like |PhoU-like |PhoU-like |Phosphate transport system protein PhoU |Aquifex aeolicus [TaxId: 63363]
d1x04a1 : (ASP31) (ALA225) [view usage] : a.238.1.1 |BAR/IMD domain-like |BAR/IMD domain-like |BAR domain |Endophilin-1 |Human (Homo sapiens) [TaxId: 9606]
d2ehof_ : (CYS3) (GLY95) [view usage] : a.278.1.1 |GINS helical bundle-like |GINS helical bundle-like |PSF1 N-terminal domain-like |DNA replication complex GINS protein PSF1 |Human (Homo sapiens) [TaxId: 9606]
d1zcaa1 : (GLN85) (ASP158) [view usage] : a.66.1.1 |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Mouse (Mus musculus) [TaxId: 10090]
d1tjud_ : (ARG238) (THR354) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d2ahmc_ : (SER6) (MET67) [view usage] : a.8.9.1 |immunoglobulin/albumin-binding domain-like |Coronavirus NSP7-like |Coronavirus NSP7-like |automated matches |SARS coronavirus [TaxId: 227859]
d4gyca_ : (PHE69) (SER150) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d1qlba1 : (PHE464) (ASP539) [view usage] : a.7.3.1 |Spectrin repeat-like |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Fumarate reductase |Wolinella succinogenes [TaxId: 844]
d2fefc2 : (THR143) (GLY190) [view usage] : a.254.1.1 |PA2201 C-terminal domain-like |PA2201 C-terminal domain-like |PA2201 C-terminal domain-like |Hypothetical protein PA2201 |Pseudomonas aeruginosa [TaxId: 287]
d4lh6a_ : (LEU8) (GLY70) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, a.118, a.102, a.127, c.55, i.15, f.24, d.142, f.13, a.45, a.29, a.23, a.66, a.24, a.278, a.8, a.7, d.379, k.1, a.238,
a.46, a.277, d.279, a.296, a.254