Tableau information
Concept source: d3ui7b_ amino acid (a.a.) range (VAL722)(GLY768)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL722) (ALA732) H1
(ALA734) (ILE744) H2
(PRO746) (PRO750) H3
(PRO750) (GLY768) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -29.9° H2
H3 -167.4° -137.5° H3
H4 -148.9° -159.7° 41.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3sl6a_ : (SER364) (ILE410) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |Catalytic domain of cyclic nucleotide phosphodiesterase pde4d |Human (Homo sapiens) [TaxId: 9606]
d3dw8a_ : (GLY396) (GLN433) [view usage] : a.118.1.2 |alpha-alpha superhelix |ARM repeat |HEAT repeat |Constant regulatory domain of protein phosphatase 2a, pr65alpha |Human (Homo sapiens) [TaxId: 9606]
d2ouvb_ : (GLU721) (GLY768) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4gyva_ : (GLY623) (HIS701) [view usage] : a.87.1.0 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2ousb_ : (GLU721) (GLY768) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4lm1b_ : (GLU721) (GLY768) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j7vl_ : (GLY61) (CYS108) [view usage] : a.26.1.3 |4-helical cytokines |4-helical cytokines |Interferons/interleukin-10 (IL-10) |Interleukin-10 (cytokine synthesis inhibitory factor, CSIF) |Human (Homo sapiens) [TaxId: 9606]
d4ddla_ : (VAL712) (GLY758) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2v8ta_ : (ASN21) (LEU85) [view usage] : a.25.1.3 |Ferritin-like |Ferritin-like |Manganese catalase (T-catalase) |automated matches |Thermus thermophilus [TaxId: 262724]
d1rrmb_ : (PRO276) (GLY335) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Lactaldehyde reductase FucO |Escherichia coli [TaxId: 562]
d1tbbb_ : (SER364) (THR409) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |Catalytic domain of cyclic nucleotide phosphodiesterase pde4d |Human (Homo sapiens) [TaxId: 9606]
d2oqmc_ : (PHE-2) (LYS62) [view usage] : a.213.1.3 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |Sden0562-like |Hypothetical protein Sden0562 |Shewanella denitrificans [TaxId: 192073]
d1x1ha1 : (ASP279) (ALA333) [view usage] : a.102.3.2 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Hyaluronate lyase-like catalytic, N-terminal domain |automated matches |Bacillus sp. [TaxId: 84635]
d1e0pa_ : (GLN105) (MET163) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
d3ui7b_ : (VAL722) (GLY768) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fgja_ : (ALA436) (VAL498) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Hydroxylamine oxidoreductase, HAO |Nitrosomonas europaea [TaxId: 915]
d1vsga_ : (GLN8) (GLN114) [view usage] : h.4.1.1 |Antiparallel coiled-coil |Variant surface glycoprotein (N-terminal domain) |Variant surface glycoprotein (N-terminal domain) |Variant surface glycoprotein (N-terminal domain) |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2pf4c_ : (PRO236) (ALA273) [view usage] : a.118.1.2 |alpha-alpha superhelix |ARM repeat |HEAT repeat |Constant regulatory domain of protein phosphatase 2a, pr65alpha |Mouse (Mus musculus) [TaxId: 10090]
d1mmog_ : (ASN73) (PRO124) [view usage] : a.23.3.1 |Open three-helical up-and-down bundle |Methane monooxygenase hydrolase, gamma subunit |Methane monooxygenase hydrolase, gamma subunit |Methane monooxygenase hydrolase, gamma subunit |Methylococcus capsulatus [TaxId: 414]
d1rxqd_ : (SER20) (THR84) [view usage] : a.213.1.1 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |YfiT-like putative metal-dependent hydrolases |YfiT |Bacillus subtilis [TaxId: 1423]
d3g4kd_ : (VAL531) (ILE576) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |Catalytic domain of cyclic nucleotide phosphodiesterase pde4d |Human (Homo sapiens) [TaxId: 9606]
d4i0uh2 : (LYS286) (LYS348) [view usage] : f.17.3.1 |Transmembrane helix hairpin |Magnesium transport protein CorA, transmembrane region |Magnesium transport protein CorA, transmembrane region |Magnesium transport protein CorA |Thermotoga maritima [TaxId: 243274]
d2cwla1 : (ASN21) (LEU85) [view usage] : a.25.1.3 |Ferritin-like |Ferritin-like |Manganese catalase (T-catalase) |Manganese catalase (T-catalase) |Thermus thermophilus [TaxId: 274]
d1hy1d_ : (ASP291) (THR352) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d1qvxa_ : (LYS924) (LEU973) [view usage] : a.24.14.1 |Four-helical up-and-down bundle |FAT domain of focal adhesion kinase |FAT domain of focal adhesion kinase |FAT domain of focal adhesion kinase |Chicken (Gallus gallus) [TaxId: 9031]
d2hgj11 : (MET1) (ALA67) [view usage] : a.2.2.1 |Long alpha-hairpin |Ribosomal protein L29 (L29p) |Ribosomal protein L29 (L29p) |Ribosomal protein L29 (L29p) |Thermus thermophilus [TaxId: 274]
d2oqmd_ : (ASN-5) (LYS62) [view usage] : a.213.1.3 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |Sden0562-like |Hypothetical protein Sden0562 |Shewanella denitrificans [TaxId: 192073]
d3v98a2 : (GLY556) (GLN609) [view usage] : a.119.1.0 |Lipoxigenase |Lipoxigenase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fz2b_ : (ASP196) (ALA258) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d1bbha_ : (SER4) (GLY59) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |Cytochrome c' |Chromatium vinosum [TaxId: 1049]
d3dtuc_ : (TRP451) (THR520) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Rhodobacter sphaeroides [TaxId: 1063]
d1f5xa_ : (CYS30) (GLY93) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |RhoGEF Vav |Mouse (Mus musculus) [TaxId: 10090]
d3o8yb2 : (GLY556) (GLN609) [view usage] : a.119.1.0 |Lipoxigenase |Lipoxigenase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2avwd_ : (LEU93) (THR143) [view usage] : d.3.1.12 |Cysteine proteinases |Cysteine proteinases |IgG-specific endopeptidase IdeS (Sib38) |automated matches |Streptococcus pyogenes [TaxId: 293653]
d4phqd_ : (CYS6) (GLU103) [view usage] : h.4.4.1 |Antiparallel coiled-coil |Bacterial hemolysins |Hemolysin E (HlyE, ClyA, SheA) |automated matches |Escherichia coli [TaxId: 83333]
d1daqa_ : (ASN16) (TYR58) [view usage] : a.139.1.1 |Type I dockerin domain |Type I dockerin domain |Type I dockerin domain |Cellulosome endoglucanase SS |Clostridium thermocellum [TaxId: 1515]
d4f53a_ : (TRP45) (ASN125) [view usage] : a.118.8.0 |alpha-alpha superhelix |TPR-like |automated matches |automated matches |Bacteroides ovatus [TaxId: 411476]
d1i7da_ : (PRO562) (THR609) [view usage] : e.10.1.1 |Prokaryotic type I DNA topoisomerase |Prokaryotic type I DNA topoisomerase |Prokaryotic type I DNA topoisomerase |DNA topoisomerase III |Escherichia coli [TaxId: 562]
d1re5d_ : (PRO285) (MET348) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |3-carboxy-cis,cis-muconate cycloisomerase (CMLE) |Pseudomonas putida, strain KT2440 [TaxId: 303]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.119, a.118, a.102, a.127, a.211, e.22, d.3, a.25, f.24, f.13, a.138, a.23, a.87, a.24, a.26, h.4, a.2, e.10, a.213, f.17,
a.139