Protein Concepts Dictionary

Tableau information

Concept source:  d3pn7b_  amino acid (a.a.) range (SER90)(GLY155)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: HHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER90)  (GLU103) H1
	  (ASN110)  (MET121) H2
	  (ASN126)  (ALA137) H3
	  (TYR146)  (GLY155) H4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                          
H2      108.0°   H2                   
H3      -99.3°  151.7°   H3            
H4      153.6°  -52.0°  103.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4ds7b_ :    (VAL92)  (SER146)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Kluyveromyces lactis [TaxId: 284590]
 d1wdcb_ :    (SER85)  (LYS149)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Essential Chain |Bay scallop (Aequipecten irradians) [TaxId: 31199]
 d3obvd_ :   (LEU371)  (ILE432)   [view usage] : a.118.1.23 |alpha-alpha superhelix |ARM repeat |Diap1 N-terninal region-like |Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) |Mouse (Mus musculus) [TaxId: 10090]
 d4ds7a_ :    (VAL92)  (SER146)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Kluyveromyces lactis [TaxId: 284590]
 d1kqmb_ :    (SER85)  (GLY150)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Essential Chain |Bay scallop (Aequipecten irradians) [TaxId: 31199]
 d3pn7b_ :    (SER90)  (GLY155)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Placopecten magellanicus [TaxId: 6577]
 d3jtdb_ :    (SER85)  (GLY150)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Bay scallop (Argopecten irradians) [TaxId: 31199]
 d1kk7y_ :    (SER85)  (GLY150)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Essential Chain |Bay scallop (Aequipecten irradians) [TaxId: 31199]
 d1qviy_ :    (SER85)  (LYS149)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Essential Chain |Bay scallop (Aequipecten irradians) [TaxId: 31199]
 d4lcza_ :    (ASP54)  (ALA144)   [view usage] : f.43.1.1 |Chlorophyll a-b binding protein |Chlorophyll a-b binding protein |Chlorophyll a-b binding protein |automated matches |Spinach (Spinacia oleracea) [TaxId: 3562]
 d4tnca_ :     (ALA3)   (VAL65)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Chicken (Gallus gallus) [TaxId: 9031]
 d1ncxa_ :     (SER2)   (VAL65)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Chicken (Gallus gallus) [TaxId: 9031]
 d1sr6b_ :    (SER85)  (LYS149)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Essential Chain |Bay scallop (Aequipecten irradians) [TaxId: 31199]
 d2jpqa1 :     (ILE3)   (LEU69)   [view usage] : a.284.1.1 |YejL-like |YejL-like |YejL-like |Hypothetical protein VP2129 |Vibrio parahaemolyticus [TaxId: 670]
 d2xt0a_ :   (GLY157)  (VAL214)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Plesiocystis pacifica [TaxId: 191768]
 d4jpzc_ :    (ILE86)  (MET146)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Human (Homo sapiens) [TaxId: 9606]
 d3i5fb_ :    (GLU84)  (LYS146)   [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Todarodes pacificus [TaxId: 6637]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.69,   a.118,    a.39,    f.43,   a.284