Protein Concepts Dictionary

Tableau information

Concept source:  d1lwla_  amino acid (a.a.) range (PRO105)(THR185)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: HHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (PRO105)  (GLU128) H1
	  (GLU128)  (GLY146) H2
	  (PHE150)  (LEU166) H3
	  (ILE174)  (THR185) H4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                          
H2      -62.1°   H2                   
H3      107.1°  157.7°   H3            
H4     -136.6°  -87.7°  110.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3zkpa_ :   (VAL102)  (ASP171)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Saccharopolyspora erythraea [TaxId: 405948]
 d3dl9a_ :   (GLY130)  (ALA221)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Vitamin D 25-hydroxylase Cyp2R1 |Human (Homo sapiens) [TaxId: 9606]
 d4rc5b_ :   (ASN149)  (ALA185)   [view usage] : a.25.1.6 |Ferritin-like |Ferritin-like |PMT1231-like |automated matches |Synechococcus elongatus [TaxId: 1140]
 d3buja_ :    (SER99)  (GLY154)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Micromonospora echinospora [TaxId: 1877]
 d4rc7b_ :   (ASN149)  (ALA185)   [view usage] : a.25.1.6 |Ferritin-like |Ferritin-like |PMT1231-like |automated matches |Synechococcus elongatus [TaxId: 1140]
 d4qsda_ :   (GLU195)  (THR242)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
 d4h9pa_ :    (LEU48)  (ILE130)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1gjma_ :   (MET121)  (HIS176)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-CAM |Pseudomonas putida [TaxId: 303]
 d3c6gb_ :   (GLY130)  (ALA221)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Vitamin D 25-hydroxylase Cyp2R1 |Human (Homo sapiens) [TaxId: 9606]
 d4h9na_ :    (LEU48)  (ILE130)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1mt3a_ :   (VAL134)  (GLU200)   [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Tricorn interacting factor F1 |Thermoplasma acidophilum [TaxId: 2303]
 d2nzaa_ :   (THR116)  (ILE182)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |automated matches |Streptomyces coelicolor [TaxId: 100226]
 d1c8ja_ :   (PRO105)  (THR185)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-CAM |Pseudomonas putida [TaxId: 303]
 d3dg6a1 :    (THR78)  (GLY123)   [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d1xmea_ :   (ASP372)  (ALA463)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
 d1blqa_ :    (THR39)   (ASP89)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Chicken (Gallus gallus) [TaxId: 9031]
 d1dxrl_ :   (GLY225)  (SER273)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodopseudomonas viridis [TaxId: 1079]
 d1teva_ :    (SER33)   (PHE89)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |UMP/CMP kinase |Human (Homo sapiens) [TaxId: 9606]
 d1j51a_ :   (PRO105)  (THR185)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-CAM |Pseudomonas putida [TaxId: 303]
 d1t87a_ :   (PRO105)  (THR185)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-CAM |Pseudomonas putida [TaxId: 303]
 d4h9oa_ :    (LEU48)  (ILE130)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2fdub_ :   (GLY121)  (THR214)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4g71a_ :   (ASP372)  (ALA463)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
 d3ebsb_ :   (GLU122)  (THR214)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2jjoa_ :   (VAL102)  (ASP171)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Saccharopolyspora erythraea [TaxId: 1836]
 d3hzsa_ :    (TYR91)  (GLN166)   [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 196620]
 d4hgab_ :    (LEU48)  (ILE130)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1wvva_ :   (ASP216)  (LEU284)   [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Streptomyces griseus [TaxId: 1911]
 d1nbia_ :    (ASP19)   (TYR44)   [view usage] : c.66.1.5 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Glycine N-methyltransferase |Glycine N-methyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.69,    c.94,   a.104,    c.66,    c.37,     d.2,    f.26,    a.25,    f.24,    a.39,    d.54,    a.22