Tableau information
Concept source: d1x9fa_ amino acid (a.a.) range (THR87)(LYS148)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR87) (LYS105) H1
(LYS109) (ARG121) H2
(VAL122) (LEU127) H3
(VAL132) (LYS148) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 118.5° H2
H3 127.3° -24.4° H3
H4 -60.3° 160.4° 138.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1rrma_ : (HIS339) (TRP383) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Lactaldehyde reductase FucO |Escherichia coli [TaxId: 562]
d1tqca_ : (PRO168) (TYR228) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Sheep (Ovis aries) [TaxId: 9940]
d1jt6a2 : (ASN110) (SER187) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Multidrug binding protein QacR |Staphylococcus aureus [TaxId: 1280]
d1t0qb_ : (ASP247) (GLY329) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouE |Pseudomonas stutzeri [TaxId: 316]
d1cxzb_ : (SER14) (VAL98) [view usage] : a.2.6.1 |Long alpha-hairpin |HR1 repeat |HR1 repeat |Protein kinase c-like 1, pkn/prk1 |Human (Homo sapiens) [TaxId: 9606]
d4cj9a_ : (SER50) (ASN93) [view usage] : a.298.1.1 |Left-handed alpha-alpha superhelix |TAL effector-like |TAL (transcription activator-like) effector |BurrH |Burkholderia rhizoxinica [TaxId: 412963]
d1qlbc_ : (VAL157) (GLN238) [view usage] : f.21.2.1 |Heme-binding four-helical bundle |Fumarate reductase respiratory complex transmembrane subunits |Fumarate reductase respiratory complex cytochrome b subunit, FrdC |Fumarate reductase respiratory complex cytochrome b subunit, FrdC |Wolinella succinogenes [TaxId: 844]
d1j4na_ : (SER3) (SER68) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |Aquaporin-1 |Cow (Bos taurus) [TaxId: 9913]
d3jwqa_ : (TRP772) (ALA857) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3uhia_ : (PRO87) (LEU146) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Ark clam (Scapharca inaequivalvis) [TaxId: 6561]
d1rrmb_ : (HIS339) (TRP383) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Lactaldehyde reductase FucO |Escherichia coli [TaxId: 562]
d1mbaa_ : (ALA81) (ALA144) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Myoglobin |Slug sea hare (Aplysia limacina) [TaxId: 6502]
d4hrra_ : (PRO87) (LEU149) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin I |Ark clam (Scapharca inaequivalvis) [TaxId: 6561]
d1szpb1 : (MET93) (LEU139) [view usage] : a.60.4.1 |SAM domain-like |Rad51 N-terminal domain-like |DNA repair protein Rad51, N-terminal domain |DNA repair protein Rad51, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ad6a_ : (PRO515) (ALA562) [view usage] : a.74.1.3 |Cyclin-like |Cyclin-like |Retinoblastoma tumor suppressor domains |Retinoblastoma tumor suppressor domains |Human (Homo sapiens) [TaxId: 9606]
d1n8va_ : (THR59) (LYS103) [view usage] : a.118.21.1 |alpha-alpha superhelix |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Cabbage moth (Mamestra brassicae) [TaxId: 55057]
d3n1xb_ : (ASP247) (GLY329) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouE |Pseudomonas sp. [TaxId: 320855]
d2ns1a_ : (ASP6) (ALA120) [view usage] : f.44.1.0 |Ammonium transporter |Ammonium transporter |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1ikua_ : (SER4) (PHE57) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Recoverin |Cow (Bos taurus) [TaxId: 9913]
d1h97a_ : (ASP84) (ALA145) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Trematode hemoglobin/myoglobin |Paramphistomum epiclitum [TaxId: 54403]
d1x9fa_ : (THR87) (LYS148) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Extracellular dodecameric hemoglobin (erythrocruorin), subunit IV (globin A) |Common earthworm (Lumbricus terrestris) [TaxId: 6398]
d1n8ua_ : (THR59) (ALA102) [view usage] : a.118.21.1 |alpha-alpha superhelix |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Cabbage moth (Mamestra brassicae) [TaxId: 55057]
d4mcka_ : (SER3) (THR63) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Maize (Zea mays) [TaxId: 4577]
d3v93f_ : (VAL529) (GLY611) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d4hrrb_ : (ASP88) (LEU151) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin I |Ark clam (Scapharca inaequivalvis) [TaxId: 6561]
d1acaa_ : (GLU4) (TYR84) [view usage] : a.11.1.1 |Acyl-CoA binding protein-like |Acyl-CoA binding protein |Acyl-CoA binding protein |Acyl-CoA binding protein |Cow (Bos taurus) [TaxId: 9913]
d1olpa1 : (ASP173) (SER244) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Alpha-toxin, N-terminal domain |Clostridium absonum [TaxId: 29369]
d4hbia_ : (PRO87) (LEU146) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin I |Ark clam (Scapharca inaequivalvis) [TaxId: 6561]
d2bs2c_ : (GLY155) (GLN238) [view usage] : f.21.2.1 |Heme-binding four-helical bundle |Fumarate reductase respiratory complex transmembrane subunits |Fumarate reductase respiratory complex cytochrome b subunit, FrdC |automated matches |Wolinella succinogenes [TaxId: 844]
d1kx8a_ : (THR59) (GLY106) [view usage] : a.118.21.1 |alpha-alpha superhelix |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Cabbage moth (Mamestra brassicae) [TaxId: 55057]
d1liaa_ : (GLY114) (LEU173) [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |Phycoerythrin alpha subunit |Red alga (Polysiphonia urceolata) [TaxId: 65404]
d1y6da_ : (LEU6) (ALA69) [view usage] : a.24.10.5 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Phosphorelay protein luxU |Phosphorelay protein luxU |Vibrio harveyi [TaxId: 669]
d1npca_ : (ILE138) (TYR275) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Neutral protease |Bacillus cereus, strain dsm 3101 [TaxId: 1396]
d1qspa_ : (ASN10) (GLY74) [view usage] : a.24.10.2 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Phosphorelay protein-like |Phosphorelay protein ypd1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1tfba1 : (ALA113) (TYR165) [view usage] : a.74.1.2 |Cyclin-like |Cyclin-like |Transcription factor IIB (TFIIB), core domain |Transcription factor IIB (TFIIB), core domain |Human (Homo sapiens) [TaxId: 9606]
d1jusa2 : (ASN110) (SER187) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Multidrug binding protein QacR |Staphylococcus aureus [TaxId: 1280]
d1y9ia_ : (VAL97) (ASP164) [view usage] : a.195.1.1 |YutG-like |YutG-like |YutG-like |Low temperature requirement C protein, LtrC |Listeria monocytogenes [TaxId: 1639]
d1eyxa_ : (GLY112) (SER164) [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |Phycoerythrin alpha subunit |Red algae (Gracilaria chilensis) [TaxId: 2775]
d1kqqa_ : (LEU77) (ASN129) [view usage] : a.4.3.1 |DNA/RNA-binding 3-helical bundle |ARID-like |ARID domain |DNA-binding domain from the dead ringer protein |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1or6b_ : (ASP110) (LEU177) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Heme-based aerotactic transducer HemAT, sensor domain |Bacillus subtilis [TaxId: 1423]
d2fbqa2 : (TYR134) (ALA209) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Transcriptional regulator PsrA |Pseudomonas aeruginosa [TaxId: 287]
d1n8vb_ : (THR59) (LYS103) [view usage] : a.118.21.1 |alpha-alpha superhelix |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Cabbage moth (Mamestra brassicae) [TaxId: 55057]
d2kk0a_ : (TRP88) (ARG141) [view usage] : a.4.3.1 |DNA/RNA-binding 3-helical bundle |ARID-like |ARID domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2chma1 : (TRP772) (ALA857) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx |Human (Homo sapiens) [TaxId: 9606]
d6hbia_ : (PRO87) (LEU146) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin I |Ark clam (Scapharca inaequivalvis) [TaxId: 6561]
d1rfzd_ : (GLY95) (ALA161) [view usage] : a.195.1.1 |YutG-like |YutG-like |YutG-like |YutG homologue |Bacillus stearothermophilus [TaxId: 1422]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.298, a.118, d.92, a.211, e.22, d.2, a.25, f.21, a.1, a.4, a.39, f.19, a.74, a.124, a.24, d.6, a.11, a.60, f.44, a.2,
a.121, a.195