Tableau information
Concept source: d3dbrd_ amino acid (a.a.) range (PRO214)(ARG287)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO214) (ALA219) H1
(PRO225) (GLY244) H2
(PRO254) (ASN272) H3
(THR277) (ARG287) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -71.4° H2
H3 85.8° 124.5° H3
H4 -146.3° -75.0° 111.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1biya1 : (PRO144) (ALA182) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]
d2bo4b_ : (THR295) (GLU381) [view usage] : c.68.1.18 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |MGS-like |automated matches |Rhodothermus marinus [TaxId: 29549]
d3ofta_ : (SER107) (ARG172) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Novosphingobium aromaticivorans [TaxId: 279238]
d3o3fa_ : (THR165) (ARG221) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |automated matches |Thermotoga maritima [TaxId: 2336]
d3dbhb_ : (PRO214) (ARG287) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d2jy5a_ : (ASN542) (GLY585) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qgia_ : (ASP133) (ALA191) [view usage] : d.2.1.7 |Lysozyme-like |Lysozyme-like |Chitosanase |Endochitosanase |Bacillus circulans [TaxId: 1397]
d2yaya_ : (SER217) (LEU264) [view usage] : a.204.1.0 |all-alpha NTP pyrophosphatases |all-alpha NTP pyrophosphatases |automated matches |automated matches |Leishmania major [TaxId: 5664]
d2dnaa1 : (ALA14) (SER58) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |Ubiquilin-like protein Ubqlnl |Mouse (Mus musculus) [TaxId: 10090]
d1sfka_ : (SER25) (ASN95) [view usage] : a.190.1.1 |Flavivirus capsid protein C |Flavivirus capsid protein C |Flavivirus capsid protein C |Flavivirus capsid protein C |Kunjin virus [TaxId: 11077]
d2cjea_ : (SER217) (ALA265) [view usage] : a.204.1.0 |all-alpha NTP pyrophosphatases |all-alpha NTP pyrophosphatases |automated matches |automated matches |Leishmania major [TaxId: 5664]
d1ufza_ : (SER20) (SER81) [view usage] : a.5.9.1 |RuvA C-terminal domain-like |HBS1-like domain |HBS1-like domain |HBS1-like protein |Mouse (Mus musculus) [TaxId: 10090]
d2y4ka_ : (THR294) (GLU381) [view usage] : c.68.1.18 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |MGS-like |Mannosylglycerate synthase, MGS |Rhodothermus marinus [TaxId: 29549]
d3dblb_ : (PRO214) (ARG287) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1wj7a1 : (GLU23) (GLU77) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |Ubiquitin-associated protein 2-like Ubap2l |Mouse (Mus musculus) [TaxId: 10090]
d3dbrd_ : (PRO214) (ARG287) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d2d05a_ : (ASP133) (ALA191) [view usage] : d.2.1.7 |Lysozyme-like |Lysozyme-like |Chitosanase |Endochitosanase |Bacillus circulans [TaxId: 1397]
d1y19b1 : (PRO209) (CYS286) [view usage] : a.11.2.1 |Acyl-CoA binding protein-like |Second domain of FERM |Second domain of FERM |Talin-1 |Mouse (Mus musculus) [TaxId: 10090]
d1pzna1 : (GLY44) (ALA91) [view usage] : a.60.4.1 |SAM domain-like |Rad51 N-terminal domain-like |DNA repair protein Rad51, N-terminal domain |DNA repair protein Rad51, N-terminal domain |Pyrococcus furiosus [TaxId: 2261]
d1xeqb_ : (GLY13) (MET91) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |N-terminal, RNA-binding domain of nonstructural protein NS1 |Influenza B virus [TaxId: 11520]
d1qgta_ : (TYR38) (THR128) [view usage] : a.62.1.1 |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |Hepatitis B virus [TaxId: 10407]
d4ejgd_ : (GLY121) (THR214) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1d9ua_ : (SER87) (ALA149) [view usage] : d.2.1.4 |Lysozyme-like |Lysozyme-like |Lambda lysozyme |Lambda lysozyme |Bacteriophage lambda [TaxId: 10710]
d3dbrb_ : (PRO214) (ARG287) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d3sdla_ : (GLY13) (MET91) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza b virus [TaxId: 107412]
d1q19a1 : (GLY445) (LYS501) [view usage] : c.26.2.1 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |N-type ATP pyrophosphatases |beta-Lactam synthetase |Pectobacterium carotovorum [TaxId: 554]
d1z00b1 : (LEU827) (LEU868) [view usage] : a.60.2.5 |SAM domain-like |RuvA domain 2-like |Hef domain-like |DNA repair endonuclease XPF |Human (Homo sapiens) [TaxId: 9606]
d1oiza1 : (GLY11) (CYS80) [view usage] : a.5.3.1 |RuvA C-terminal domain-like |CRAL/TRIO N-terminal domain |CRAL/TRIO N-terminal domain |Alpha-tocopherol transfer protein |Human (Homo sapiens) [TaxId: 9606]
d3dbhf_ : (PRO214) (ARG287) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94, a.104, c.68, c.26, c.55, d.2, c.111, a.11, a.62, a.60, a.204, a.16, a.5, a.190