Protein Concepts Dictionary

Tableau information

Concept source:  d2cb8b_  amino acid (a.a.) range (GLN3)(LYS84)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: HHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLN3)   (LEU16) H1
	   (SER21)   (GLY38) H2
	   (PHE50)   (LYS63) H3
	   (SER66)   (LYS84) H4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                          
H2     -150.9°   H2                   
H3      153.4°  -55.6°   H3            
H4       38.3° -148.2°  124.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3flva_ :     (SER3)   (MET92)   [view usage] : a.11.1.0 |Acyl-CoA binding protein-like |Acyl-CoA binding protein |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3fp5a_ :     (LYS5)   (ASP92)   [view usage] : a.11.1.0 |Acyl-CoA binding protein-like |Acyl-CoA binding protein |automated matches |automated matches |Moniliophthora perniciosa [TaxId: 153609]
 d1owba_ :   (ASP312)  (GLY373)   [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Escherichia coli [TaxId: 562]
 d1nxea_ :   (ASP312)  (GLY373)   [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Escherichia coli [TaxId: 562]
 d1hbka_ :     (ALA2)   (ILE82)   [view usage] : a.11.1.1 |Acyl-CoA binding protein-like |Acyl-CoA binding protein |Acyl-CoA binding protein |Acyl-CoA binding protein |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d2cb8b_ :     (GLN3)   (LYS84)   [view usage] : a.11.1.1 |Acyl-CoA binding protein-like |Acyl-CoA binding protein |Acyl-CoA binding protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1vlsa_ :   (TYR104)  (PHE180)   [view usage] : a.24.2.1 |Four-helical up-and-down bundle |Aspartate receptor, ligand-binding domain |Aspartate receptor, ligand-binding domain |Aspartate receptor, ligand-binding domain |Salmonella typhimurium [TaxId: 90371]
 d2wh5b_ :    (LYS10)   (ASP97)   [view usage] : a.11.1.0 |Acyl-CoA binding protein-like |Acyl-CoA binding protein |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2yb0d_ :    (GLY11)   (SER93)   [view usage] : a.204.1.0 |all-alpha NTP pyrophosphatases |all-alpha NTP pyrophosphatases |automated matches |automated matches |Leishmania major [TaxId: 5664]
 d3flvb_ :     (SER3)   (ILE89)   [view usage] : a.11.1.0 |Acyl-CoA binding protein-like |Acyl-CoA binding protein |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1st7a_ :     (SER2)   (TYR84)   [view usage] : a.11.1.0 |Acyl-CoA binding protein-like |Acyl-CoA binding protein |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1bmoa1 :   (LEU139)  (LYS205)   [view usage] : a.39.1.3 |EF Hand-like |EF-hand |Osteonectin |C-terminal (EC) domain of BM-40/SPARC/osteonectin |Human (Homo sapiens) [TaxId: 9606]
 d2q7ma1 :    (PRO65)  (PHE138)   [view usage] : f.56.1.1 |MAPEG domain-like |MAPEG domain-like |MAPEG domain |Arachidonate 5-lipoxygenase-activating protein, FLAP |Human (Homo sapiens) [TaxId: 9606]
 d6csca_ :   (PRO328)  (GLY386)   [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Chicken (Gallus gallus) [TaxId: 9031]
 d2cb8a_ :     (SER2)   (LYS84)   [view usage] : a.11.1.1 |Acyl-CoA binding protein-like |Acyl-CoA binding protein |Acyl-CoA binding protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2wh5a_ :    (GLN11)   (ASP97)   [view usage] : a.11.1.0 |Acyl-CoA binding protein-like |Acyl-CoA binding protein |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.103,    a.39,    a.24,    a.11,   a.204,    f.56