Tableau information
Concept source: d2af7b_ amino acid (a.a.) range (ASP52)(GLU119)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP52) (ARG68) H1
(ASP70) (ASN82) H2
(SER86) (GLY102) H3
(GLY102) (GLU119) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -162.3° H2
H3 -40.3° 141.5° H3
H4 125.2° -56.7° 161.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1hbhb_ : (LEU71) (LYS143) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, beta-chain |Emerald rockcod (Pagothenia bernacchii) [TaxId: 40690]
d3zlrb_ : (LEU108) (ASP176) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1siya_ : (THR2) (GLY74) [view usage] : a.52.1.0 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |automated matches |automated matches |Vigna radiata [TaxId: 3916]
d1kgna_ : (PHE172) (GLY276) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Corynebacterium ammoniagenes [TaxId: 1697]
d1aa7a_ : (PRO90) (GLN158) [view usage] : a.95.1.1 |Influenza virus matrix protein M1 |Influenza virus matrix protein M1 |Influenza virus matrix protein M1 |Influenza virus matrix protein M1 |Influenza A virus [TaxId: 11320]
d2z46f_ : (LYS4) (GLN111) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. [TaxId: 32049]
d1b8da_ : (PRO76) (CYS164) [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |Phycoerythrin alpha subunit |Red alga (Griffithsia monilis) [TaxId: 42003]
d2r7da2 : (SER340) (PRO403) [view usage] : b.40.4.16 |OB-fold |Nucleic acid-binding proteins |RNB domain-like |Ribonuclease II family protein DR0020 |Deinococcus radiodurans [TaxId: 1299]
d2gtvx1 : (GLU3) (THR101) [view usage] : a.130.1.3 |Chorismate mutase II |Chorismate mutase II |monomeric chorismate mutase |Chorismate mutase-like protein MJ0246 |Methanococcus jannaschii [TaxId: 2190]
d2pejd1 : (PHE3) (LEU109) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. pcc 7002 [TaxId: 32049]
d2v2tb2 : (THR143) (GLU204) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1v07a_ : (ALA45) (LEU109) [view usage] : a.1.1.4 |Globin-like |Globin-like |Nerve tissue mini-hemoglobin (neural globin) |Nerve tissue mini-hemoglobin (neural globin) |Milky ribbon worm (Cerebratulus lacteus) [TaxId: 6221]
d1q6aa_ : (PRO7) (SER102) [view usage] : a.186.1.1 |KaiA/RbsU domain |KaiA/RbsU domain |Circadian clock protein KaiA, C-terminal domain |Circadian clock protein KaiA, C-terminal domain |Thermosynechococcus elongatus bp-1 [TaxId: 197221]
d1ng6a_ : (SER2) (LEU91) [view usage] : a.182.1.1 |GatB/YqeY motif |GatB/YqeY motif |GatB/YqeY domain |Hypothetical protein YqeY |Bacillus subtilis [TaxId: 1423]
d1kn1b_ : (ARG80) (SER174) [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |Allophycocyanin beta subunit |Red algae (Porphyra yezoensis) [TaxId: 2788]
d1le5b2 : (VAL147) (GLU204) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d5r1ra1 : (LEU19) (ALA93) [view usage] : a.98.1.1 |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |Escherichia coli [TaxId: 562]
d2pemd1 : (PHE3) (GLU107) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. pcc 7002 [TaxId: 32049]
d2vlqa_ : (THR11) (GLY79) [view usage] : a.28.2.1 |Acyl carrier protein-like |Colicin E immunity proteins |Colicin E immunity proteins |ImmE9 protein (Im9) |Escherichia coli [TaxId: 562]
d2peqa_ : (PHE3) (LEU109) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. pcc 7002 [TaxId: 32049]
d2es9a1 : (ALA12) (SER83) [view usage] : a.247.1.1 |YoaC-like |YoaC-like |YoaC-like |Hypothetical protein YoaC |Salmonella typhimurium [TaxId: 90371]
d2fq0a_ : (THR4) (ASN52) [view usage] : a.28.1.0 |Acyl carrier protein-like |ACP-like |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d2hmfa1 : (VAL45) (ASP143) [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |Aspartokinase |Methanococcus jannaschii [TaxId: 2190]
d1r1ra1 : (ASP20) (LYS92) [view usage] : a.98.1.1 |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |Escherichia coli [TaxId: 562]
d4k89a_ : (GLY227) (GLY294) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Elastase |Pseudomonas aeruginosa [TaxId: 287]
d4bmqb_ : (PHE165) (ASN267) [view usage] : a.25.1.0 |Ferritin-like |Ferritin-like |automated matches |automated matches |Bacillus cereus [TaxId: 1396]
d2r1ra1 : (ASP20) (LYS92) [view usage] : a.98.1.1 |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |Escherichia coli [TaxId: 562]
d4oj7a_ : (THR37) (VAL151) [view usage] : a.130.1.0 |Chorismate mutase II |Chorismate mutase II |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1tfra1 : (GLY183) (ASP259) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |T4 RNase H |Bacteriophage T4 [TaxId: 10665]
d2pemf1 : (PHE3) (LEU109) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. pcc 7002 [TaxId: 32049]
d4a64a_ : (ASP196) (PHE289) [view usage] : a.118.17.0 |alpha-alpha superhelix |Cullin repeat-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1s6da_ : (CYS11) (ASN95) [view usage] : a.52.1.3 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Seed storage protein, 2S albumin |Methionine-rich 2S protein (albumin 8) |Common sunflower (Helianthus annuus) [TaxId: 4232]
d2hyec2 : (MET187) (THR276) [view usage] : a.118.17.1 |alpha-alpha superhelix |Cullin repeat-like |Cullin repeat |Cullin-4A |Human (Homo sapiens) [TaxId: 9606]
d2pema1 : (LYS4) (THR110) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. pcc 7002 [TaxId: 32049]
d1aa7b_ : (ASP289) (GLN358) [view usage] : a.95.1.1 |Influenza virus matrix protein M1 |Influenza virus matrix protein M1 |Influenza virus matrix protein M1 |Influenza virus matrix protein M1 |Influenza A virus [TaxId: 11320]
d4f68a_ : (ALA45) (SER107) [view usage] : a.1.1.4 |Globin-like |Globin-like |Nerve tissue mini-hemoglobin (neural globin) |automated matches |Milky ribbon worm (Cerebratulus lacteus) [TaxId: 6221]
d4iv6a1 : (THR4) (ALA84) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d4iv6b1 : (THR4) (GLY86) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d3c1nc1 : (VAL45) (GLY145) [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d3vpma_ : (THR220) (LEU335) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3se5a_ : (THR92) (LEU165) [view usage] : a.265.1.1 |Fic-like |Fic-like |Fic-like |automated matches |Neisseria meningitidis [TaxId: 491]
d2p0ta1 : (ASP80) (ASP166) [view usage] : a.290.1.1 |PSPTO4464-like |PSPTO4464-like |PSPTO4464-like |Uncharacterized protein PSPTO4464 |Pseudomonas syringae pv. tomato [TaxId: 323]
d3h7ia2 : (SER184) (ASP259) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |T4 RNase H |Bacteriophage T4 [TaxId: 10665]
d3olja_ : (THR220) (GLY336) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2peka1 : (PHE3) (THR110) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. pcc 7002 [TaxId: 32049]
d4pusa_ : (MET93) (GLN158) [view usage] : a.95.1.1 |Influenza virus matrix protein M1 |Influenza virus matrix protein M1 |Influenza virus matrix protein M1 |automated matches |Influenza a virus [TaxId: 381518]
d1r8ja1 : (PRO183) (ILE280) [view usage] : a.186.1.1 |KaiA/RbsU domain |KaiA/RbsU domain |Circadian clock protein KaiA, C-terminal domain |Circadian clock protein KaiA, C-terminal domain |Synechococcus elongatus PCC 7942 [TaxId: 1140]
d2eyqb4 : (ASP220) (SER266) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d2jn8a_ : (THR11) (GLY84) [view usage] : a.247.1.1 |YoaC-like |YoaC-like |YoaC-like |automated matches |Salmonella typhimurium [TaxId: 602]
d3uamc_ : (SER27) (ASN93) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d2no8a_ : (PHE18) (ASN78) [view usage] : a.28.2.1 |Acyl carrier protein-like |Colicin E immunity proteins |Colicin E immunity proteins |automated matches |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.118, d.92, b.40, c.37, e.6, b.2, b.1, c.73, a.25, a.152, a.1, f.1, a.265, a.60, a.28, a.280, a.130, a.52, a.186, a.95,
a.98, a.182, a.247, a.290