Tableau information
Concept source: d2a61a1 amino acid (a.a.) range (LYS5)(LEU68)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS5) (LYS25) H1
(PRO34) (GLU46) H2
(ARG50) (LEU58) H3
(LYS62) (LEU68) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 99.3° H2
H3 -127.2° 122.4° H3
H4 45.0° -84.4° 104.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2a61a1 : (LYS5) (LEU68) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Transcriptional regulator TM0710 |Thermotoga maritima [TaxId: 2336]
d3zk8a_ : (ALA98) (LYS161) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3zk7a_ : (ALA98) (ASP162) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1qgja_ : (ASN13) (SER70) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Thale cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]
d1wija_ : (LYS226) (ILE286) [view usage] : a.140.5.1 |LEM/SAP HeH motif |DNA-binding domain of EIN3-like |DNA-binding domain of EIN3-like |Ethylene insensitive 3 (EIN3)-like protein 3, EIL3 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1qyia_ : (GLY143) (GLU211) [view usage] : c.108.1.13 |HAD-like |HAD-like |Hypothetical protein MW1667 (SA1546) |Hypothetical protein MW1667 (SA1546) |Staphylococcus aureus [TaxId: 1280]
d1jfzb_ : (GLU288) (GLY346) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |RNase III endonuclease catalytic domain |Aquifex aeolicus [TaxId: 63363]
d1z1ga2 : (GLY283) (ASP344) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Integrase (Int) |Bacteriophage lambda [TaxId: 10710]
d1w5ct_ : (PRO102) (GLY132) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d1fipa_ : (LEU27) (GLY96) [view usage] : a.4.1.12 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |FIS-like |FIS protein |Escherichia coli [TaxId: 562]
d1o0wa1 : (LYS111) (GLY163) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |RNase III endonuclease catalytic domain |Thermotoga maritima [TaxId: 2336]
d1svla_ : (TRP270) (LYS308) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Papillomavirus large T antigen helicase domain |Simian virus 40 [TaxId: 10633]
d1ygoa_ : (ALA12) (GLY58) [view usage] : a.77.1.2 |DEATH domain |DEATH domain |DEATH domain, DD |Pelle death domain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4fcca2 : (ALA374) (GLN444) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli [TaxId: 83334]
d2uw1b_ : (MET260) (ALA340) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Hedera helix [TaxId: 4052]
d1lfpa_ : (LYS16) (ALA74) [view usage] : e.39.1.1 |YebC-like |YebC-like |YebC-like |Hypothetical protein aq1575 |Aquifex aeolicus [TaxId: 63363]
d3fisa_ : (LEU27) (GLY96) [view usage] : a.4.1.12 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |FIS-like |FIS protein |Escherichia coli [TaxId: 562]
d1i4sa_ : (LEU7) (GLY43) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |RNase III endonuclease catalytic domain |Aquifex aeolicus [TaxId: 63363]
d1t3wb_ : (ASP475) (TRP522) [view usage] : a.236.1.1 |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |Escherichia coli [TaxId: 562]
d2a61c_ : (LYS5) (LEU68) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |automated matches |Thermotoga maritima [TaxId: 2336]
d2uw1a_ : (MET260) (ARG339) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Hedera helix [TaxId: 4052]
d1dgsa1 : (ARG431) (LYS499) [view usage] : a.60.2.2 |SAM domain-like |RuvA domain 2-like |NAD+-dependent DNA ligase, domain 3 |NAD+-dependent DNA ligase, domain 3 |Thermus filiformis [TaxId: 276]
d3ifzb_ : (TYR31) (GLN101) [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1q9cd_ : (VAL107) (PHE176) [view usage] : a.22.1.3 |Histone-fold |Histone-fold |TBP-associated factors, TAFs |Histone domain of Son of sevenless protein |Human (Homo sapiens) [TaxId: 9606]
d4h9sc_ : (LYS31) (PHE100) [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |Human (Homo sapiens) [TaxId: 9606]
d1n25a_ : (LYS271) (LYS308) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Papillomavirus large T antigen helicase domain |Simian virus 40 [TaxId: 10633]
d2he7a2 : (ASP199) (ARG275) [view usage] : a.11.2.0 |Acyl-CoA binding protein-like |Second domain of FERM |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2jula_ : (LEU79) (GLY125) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3f0oa1 : (LEU3) (THR61) [view usage] : a.4.5.79 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MerB N-terminal domain-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d1qasb1 : (ARG211) (ARG268) [view usage] : a.39.1.7 |EF Hand-like |EF-hand |EF-hand modules in multidomain proteins |Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1pvqa2 : (ASN258) (ARG326) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d4hgac_ : (THR30) (GLY101) [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |Human (Homo sapiens) [TaxId: 9606]
d1i1sa_ : (LYS3) (LYS58) [view usage] : a.4.5.9 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Transcription factor MotA, activation domain |Transcription factor MotA, activation domain |Bacteriophage T4 [TaxId: 10665]
d1q9cb_ : (PRO106) (PHE176) [view usage] : a.22.1.3 |Histone-fold |Histone-fold |TBP-associated factors, TAFs |Histone domain of Son of sevenless protein |Human (Homo sapiens) [TaxId: 9606]
d1re5d_ : (ALA353) (GLU409) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |3-carboxy-cis,cis-muconate cycloisomerase (CMLE) |Pseudomonas putida, strain KT2440 [TaxId: 303]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.2, c.108, c.92, a.93, a.127, c.37, i.5, e.11, a.25, a.4, a.39, a.77, a.149, a.11, a.60, a.22, e.39, a.140, d.163, a.236