Tableau information
Concept source: d2coma1 amino acid (a.a.) range (PRO42)(GLY99)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO42) (ASN63) H1
(THR69) (LEU77) H2
(ALA79) (THR85) H3
(THR85) (GLY99) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 116.3° H2
H3 -89.8° -144.9° H3
H4 -51.9° 125.1° -89.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ug0a_ : (THR27) (SER83) [view usage] : a.217.1.1 |Surp module (SWAP domain) |Surp module (SWAP domain) |Surp module (SWAP domain) |Splicing factor 4 |Mouse (Mus musculus) [TaxId: 10090]
d1gvia3 : (GLY249) (ASP321) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Maltogenic amylase, central domain |Thermus sp. [TaxId: 275]
d1i2ta_ : (HIS1009) (GLY1069) [view usage] : a.144.1.1 |PABP domain-like |PABC (PABP) domain |PABC (PABP) domain |hyperplastic discs protein |Human (Homo sapiens) [TaxId: 9606]
d1nexb1 : (PRO279) (ASN324) [view usage] : a.158.1.1 |F-box domain |F-box domain |F-box domain |Cdc4 F-box and linker domains |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1djgb1 : (VAL230) (SER281) [view usage] : a.39.1.7 |EF Hand-like |EF-hand |EF-hand modules in multidomain proteins |Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2ltpa_ : (THR2) (LYS68) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1l9la_ : (ARG2) (GLY63) [view usage] : a.64.1.1 |Saposin-like |Saposin |NKL-like |Granulysin, NKG5 protein |Human (Homo sapiens) [TaxId: 9606]
d2vk9a1 : (SER395) (SER462) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Alpha-toxin |Clostridium novyi [TaxId: 1542]
d1s20f_ : (THR4) (GLY59) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |2,3-diketogulonate oxidoreductase (YiaK) |Escherichia coli [TaxId: 562]
d4f10a_ : (PHE233) (ALA299) [view usage] : a.102.3.1 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Alginate lyase A1-III |Alginate lyase A1-III |Sphingomonas sp., A1 [TaxId: 28214]
d1fz7f_ : (ASP10) (ALA71) [view usage] : a.23.3.1 |Open three-helical up-and-down bundle |Methane monooxygenase hydrolase, gamma subunit |Methane monooxygenase hydrolase, gamma subunit |Methane monooxygenase hydrolase, gamma subunit |Methylococcus capsulatus [TaxId: 414]
d2icwg_ : (ASN127) (GLY196) [view usage] : a.202.1.1 |Superantigen MAM |Superantigen MAM |Superantigen MAM |Superantigen MAM |Mycoplasma arthritidis [TaxId: 2111]
d1vtnc_ : (SER123) (SER172) [view usage] : a.4.5.14 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Forkhead DNA-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1r5id_ : (ASN125) (GLY196) [view usage] : a.202.1.1 |Superantigen MAM |Superantigen MAM |Superantigen MAM |Superantigen MAM |Mycoplasma arthritidis [TaxId: 2111]
d3l0lb_ : (SER413) (LEU466) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1x4oa1 : (ASP14) (PHE70) [view usage] : a.217.1.1 |Surp module (SWAP domain) |Surp module (SWAP domain) |Surp module (SWAP domain) |Splicing factor 4 |Mouse (Mus musculus) [TaxId: 10090]
d3g1ib_ : (SER163) (PRO215) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |automated matches |Rous sarcoma virus [TaxId: 11888]
d2c3yb2 : (ASP919) (LYS954) [view usage] : c.36.1.12 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |PFOR PP module |Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI |Desulfovibrio africanus [TaxId: 873]
d2yd0a4 : (SER868) (ARG940) [view usage] : a.118.1.26 |alpha-alpha superhelix |ARM repeat |ERAP1 C-terminal-like |ERAP1 C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1djga1 : (SER229) (LEU280) [view usage] : a.39.1.7 |EF Hand-like |EF-hand |EF-hand modules in multidomain proteins |Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1s20a_ : (THR4) (GLY59) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |2,3-diketogulonate oxidoreductase (YiaK) |Escherichia coli [TaxId: 562]
d2coma1 : (PRO42) (GLY99) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |Lysine-specific histone demethylase 1, LSD1 |Human (Homo sapiens) [TaxId: 9606]
d3srza_ : (TYR393) (GLN454) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d1qasa1 : (SER229) (SER281) [view usage] : a.39.1.7 |EF Hand-like |EF-hand |EF-hand modules in multidomain proteins |Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2l3da_ : (GLN34) (HIS88) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ifwa_ : (GLN17) (THR89) [view usage] : a.144.1.1 |PABP domain-like |PABC (PABP) domain |PABC (PABP) domain |poly(A) binding protein |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1nxua_ : (THR4) (GLY59) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |2,3-diketogulonate oxidoreductase (YiaK) |Escherichia coli [TaxId: 562]
d2dofa1 : (ARG891) (LYS957) [view usage] : a.159.2.1 |Another 3-helical bundle |FF domain |FF domain |Transcription elongation regulator 1 |Human (Homo sapiens) [TaxId: 9606]
d1x4pa1 : (VAL8) (MET58) [view usage] : a.217.1.1 |Surp module (SWAP domain) |Surp module (SWAP domain) |Surp module (SWAP domain) |Arginine/serine-rich-splicing factor 14 |Human (Homo sapiens) [TaxId: 9606]
d1yovc_ : (TRP214) (THR278) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d3w6za2 : (GLY164) (GLY225) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Pyrobaculum calidifontis [TaxId: 410359]
d4f13a_ : (PHE233) (ALA299) [view usage] : a.102.3.1 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Alginate lyase A1-III |Alginate lyase A1-III |Sphingomonas sp., A1 [TaxId: 28214]
d1nvma1 : (LEU295) (LYS341) [view usage] : a.5.7.1 |RuvA C-terminal domain-like |post-HMGL domain-like |DmpG/LeuA communication domain-like |4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |Pseudomonas sp. [TaxId: 306]
d4e1ya_ : (PHE233) (ALA299) [view usage] : a.102.3.1 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Alginate lyase A1-III |Alginate lyase A1-III |Sphingomonas sp., A1 [TaxId: 28214]
d2dt6a1 : (GLU48) (GLY104) [view usage] : a.217.1.1 |Surp module (SWAP domain) |Surp module (SWAP domain) |Surp module (SWAP domain) |Splicing factor 3 subunit 1, SF3A1 |Human (Homo sapiens) [TaxId: 9606]
d1gw6a3 : (THR310) (TYR378) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Leukotriene A4 hydrolase catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1kx9b_ : (LEU13) (LYS75) [view usage] : a.118.21.1 |alpha-alpha superhelix |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Cabbage moth (Mamestra brassicae) [TaxId: 55057]
d1pyva_ : (ARG3) (TYR53) [view usage] : j.36.4.1 |Topogenic peptides |ATP synthase beta chain, mitochondrial prepeptide |ATP synthase beta chain, mitochondrial prepeptide |ATP synthase beta chain, mitochondrial prepeptide |Leadwort-leaved tobacco (Nicotiana plumbaginifolia) [TaxId: 4092]
d2gtia2 : (SER235) (GLN286) [view usage] : d.294.1.2 |EndoU-like |EndoU-like |Nsp15 C-terminal domain-like |Nsp15, C-terminal domain |Murine hepatitis virus, MHV [TaxId: 11138]
d1j9ia_ : (ASN4) (GLU65) [view usage] : a.6.1.5 |Putative DNA-binding domain |Putative DNA-binding domain |Terminase gpNU1 subunit domain |Terminase gpNU1 subunit domain |Bacteriophage lambda [TaxId: 10710]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, a.118, c.68, a.102, d.92, c.36, a.123, c.122, c.111, a.100, a.4, a.39, a.23, a.28, a.158, a.64, a.6, a.144, a.159, a.5,
d.294, a.217, a.202, j.36