Tableau information
Concept source: d1lfba_ amino acid (a.a.) range (GLY17)(PHE87)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY17) (ARG30) H1
(SER35) (GLY55) H2
(ALA61) (GLY65) H3
(GLU71) (PHE87) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 151.6° H2
H3 -116.9° 79.1° H3
H4 -59.0° 106.9° 76.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2lfba_ : (ALA19) (ALA92) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Hepatocyte nuclear factor 1a (LFB1/HNF1) |Rat (Rattus rattus) [TaxId: 10117]
d1xmfc1 : (GLU326) (ALA386) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase beta subunit |Methylococcus capsulatus [TaxId: 414]
d1m6ya1 : (ALA164) (VAL215) [view usage] : a.60.13.1 |SAM domain-like |Putative methyltransferase TM0872, insert domain |Putative methyltransferase TM0872, insert domain |Putative methyltransferase TM0872, insert domain |Thermotoga maritima [TaxId: 2336]
d1pi4a_ : (TRP93) (TRP138) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
d2ns7b1 : (ILE10) (ASP61) [view usage] : a.4.1.9 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Tetracyclin repressor-like, N-terminal domain |Tetracyclin repressor (Tet-repressor, TetR) |Escherichia coli [TaxId: 562]
d2ns7c1 : (ILE10) (ARG62) [view usage] : a.4.1.9 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Tetracyclin repressor-like, N-terminal domain |Tetracyclin repressor (Tet-repressor, TetR) |Escherichia coli [TaxId: 562]
d1fzic_ : (LEU325) (LYS389) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase beta subunit |Methylococcus capsulatus [TaxId: 414]
d1lfba_ : (GLY17) (PHE87) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Hepatocyte nuclear factor 1a (LFB1/HNF1) |Rat (Rattus rattus) [TaxId: 10117]
d1kvla_ : (TRP93) (TRP138) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
d2da6a_ : (ALA16) (PHE84) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ntha_ : (GLY380) (LEU454) [view usage] : c.1.25.1 |TIM beta/alpha-barrel |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Methanosarcina barkeri [TaxId: 2208]
d1dcqa2 : (LEU247) (ASN319) [view usage] : g.45.1.1 |ArfGap/RecO-like zinc finger |ArfGap/RecO-like zinc finger |Pyk2-associated protein beta ARF-GAP domain |Pyk2-associated protein beta ARF-GAP domain |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, a.25, a.4, a.60, g.45