Tableau information
Concept source: d3u5ii_ amino acid (a.a.) range (SER34)(SER97)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER34) (GLY49) H1
(SER51) (ASN63) H2
(GLY65) (ARG76) H3
(SER79) (SER97) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -86.6° H2
H3 98.8° 157.3° H3
H4 -71.5° -76.4° 126.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1wmaa1 : (ILE140) (GLY187) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Carbonyl reductase/20beta-hydroxysteroid dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d1g59a1 : (ASP306) (ARG370) [view usage] : a.97.1.1 |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |C-terminal domain of glutamyl-tRNA synthetase (GluRS) |C-terminal domain of glutamyl-tRNA synthetase (GluRS) |Thermus thermophilus [TaxId: 274]
d1g59a1 : (SER380) (LEU438) [view usage] : a.97.1.1 |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |C-terminal domain of glutamyl-tRNA synthetase (GluRS) |C-terminal domain of glutamyl-tRNA synthetase (GluRS) |Thermus thermophilus [TaxId: 274]
d1n52a2 : (SER434) (CYS477) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |CBP80, 80KDa nuclear cap-binding protein |Human (Homo sapiens) [TaxId: 9606]
d1t0fa1 : (SER188) (GLY239) [view usage] : a.4.5.27 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |TnsA endonuclease, C-terminal domain |TnsA endonuclease, C-terminal domain |Escherichia coli [TaxId: 562]
d3hf4a_ : (ASP75) (LEU136) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3j3bi_ : (THR34) (LYS103) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Homo sapiens [TaxId: 9606]
d4r9ua_ : (TRP192) (LEU249) [view usage] : f.22.1.1 |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |automated matches |Escherichia coli [TaxId: 83333]
d1n95a_ : (GLY288) (GLN326) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2f6lb_ : (ASP129) (ALA195) [view usage] : a.130.1.4 |Chorismate mutase II |Chorismate mutase II |Secreted chorismate mutase-like |Secreted chorismate mutase |Mycobacterium tuberculosis [TaxId: 1773]
d1zs3a1 : (LEU5) (TYR96) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |Dodecameric ferritin homolog |Lactococcus lactis, DpsB [TaxId: 1358]
d1ttxa_ : (MET1) (ASP52) [view usage] : a.39.1.4 |EF Hand-like |EF-hand |Parvalbumin |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h2tc2 : (SER434) (CYS477) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |CBP80, 80KDa nuclear cap-binding protein |Human (Homo sapiens) [TaxId: 9606]
d3iv5a_ : (ASP49) (GLY96) [view usage] : a.4.1.12 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |FIS-like |FIS protein |Escherichia coli K-12 [TaxId: 83333]
d1xs9a_ : (ASN7) (GLU51) [view usage] : i.11.1.1 |Computational models partly based on experimental data |Computational models partly based on experimental data |Computational models partly based on experimental data |Ternary complex formed between MarA, the alpha-CTD of RNA polymerase and DNA |Escherichia coli [TaxId: 562]
d1al02_ : (THR30) (GLU99) [view usage] : a.84.1.1 |Scaffolding protein gpD of bacteriophage procapsid |Scaffolding protein gpD of bacteriophage procapsid |Scaffolding protein gpD of bacteriophage procapsid |Scaffolding protein gpD of bacteriophage procapsid |Bacteriophage phi-X174 [TaxId: 10847]
d3u5ii_ : (SER34) (SER97) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d3dina2 : (ASN692) (VAL813) [view usage] : a.172.1.1 |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Thermotoga maritima MSB8 [TaxId: 243274]
d1zuja1 : (GLU9) (ASN96) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |Dodecameric ferritin homolog |Lactococcus lactis, DpsA [TaxId: 1358]
d2hrba_ : (GLN142) (GLY188) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1pema1 : (THR101) (ASN166) [view usage] : a.98.1.1 |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |Salmonella typhimurium [TaxId: 90371]
d2ee5a_ : (GLY57) (LEU104) [view usage] : a.116.1.0 |GTPase activation domain, GAP |GTPase activation domain, GAP |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ocea3 : (LYS118) (ASP177) [view usage] : a.294.1.1 |Tex N-terminal region-like |Tex N-terminal region-like |Tex N-terminal region-like |Transcriptional accessory factor Tex |Pseudomonas aeruginosa [TaxId: 287]
d1f0lb3 : (LEU297) (ARG377) [view usage] : f.1.2.1 |Toxins' membrane translocation domains |Diphtheria toxin, middle domain |Diphtheria toxin, middle domain |Diphtheria toxin, middle domain |Corynebacterium diphtheriae [TaxId: 1717]
d2i76a1 : (ARG207) (ARG257) [view usage] : a.100.1.10 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |ProC C-terminal domain-like |Hypothetical protein TM1727 |Thermotoga maritima [TaxId: 2336]
d4ddlb_ : (PRO455) (ASN534) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wjfa_ : (LEU2) (CYS40) [view usage] : a.4.10.1 |DNA/RNA-binding 3-helical bundle |N-terminal Zn binding domain of HIV integrase |N-terminal Zn binding domain of HIV integrase |N-terminal Zn binding domain of HIV integrase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1f1za1 : (SER188) (GLY239) [view usage] : a.4.5.27 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |TnsA endonuclease, C-terminal domain |TnsA endonuclease, C-terminal domain |Escherichia coli [TaxId: 562]
d1v4ua_ : (LEU78) (GLU140) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Bluefin tuna (Thunnus thynnus) [TaxId: 8237]
d2f6la1 : (LEU130) (GLN194) [view usage] : a.130.1.4 |Chorismate mutase II |Chorismate mutase II |Secreted chorismate mutase-like |Secreted chorismate mutase |Mycobacterium tuberculosis [TaxId: 1773]
d1xyua_ : (ASN143) (GLY229) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Sheep (Ovis aries) [TaxId: 9940]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.2, i.1, a.118, a.211, a.25, a.1, a.100, a.4, a.39, f.1, i.11, a.116, d.6, a.130, f.22, a.294, a.98, a.97, a.84, a.172