Tableau information
Concept source: d1aomb1 amino acid (a.a.) range (SER50)(LEU129)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER50) (ALA66) H1
(THR82) (GLY90) H2
(LEU94) (TYR100) H3
(SER116) (LEU129) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 104.8° H2
H3 51.9° 99.1° H3
H4 -90.4° -121.2° 131.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1gq1a1 : (SER50) (LEU129) [view usage] : a.3.1.2 |Cytochrome c |Cytochrome c |N-terminal (heme c) domain of cytochrome cd1-nitrite reductase |N-terminal (heme c) domain of cytochrome cd1-nitrite reductase |Paracoccus pantotrophus [TaxId: 82367]
d4qgpa_ : (HIS0) (ALA79) [view usage] : a.204.1.0 |all-alpha NTP pyrophosphatases |all-alpha NTP pyrophosphatases |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d3o5cc2 : (SER189) (LEU303) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
d1kb0a1 : (ASP589) (ILE673) [view usage] : a.3.1.6 |Cytochrome c |Cytochrome c |Quinoprotein alcohol dehydrogenase, C-terminal domain |Quinoprotein alcohol dehydrogenase, C-terminal domain |Comamonas testosteroni [TaxId: 285]
d1bw9a1 : (GLU268) (GLY330) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Phenylalanine dehydrogenase |Rhodococcus sp., M4 [TaxId: 1831]
d1coja1 : (SER20) (LEU88) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe superoxide dismutase (FeSOD) |Aquifex pyrophilus [TaxId: 2714]
d1zdnb_ : (GLY89) (GLU131) [view usage] : d.20.1.0 |UBC-like |UBC-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ngrb_ : (SER268) (LEU348) [view usage] : a.116.1.1 |GTPase activation domain, GAP |GTPase activation domain, GAP |BCR-homology GTPase activation domain (BH-domain) |Cdc42GAP |Human (Homo sapiens) [TaxId: 9606]
d2ce1a_ : (GLN6) (GLY98) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4a69d_ : (PRO419) (LEU472) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cyja_ : (LEU3) (ALA86) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d4qgpb_ : (HIS0) (ALA79) [view usage] : a.204.1.0 |all-alpha NTP pyrophosphatases |all-alpha NTP pyrophosphatases |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1c6ra_ : (LEU4) (ASP87) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Green alga (Scenedesmus obliquus) [TaxId: 3088]
d4n09d_ : (ASP287) (ARG332) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Trypanosoma brucei [TaxId: 999953]
d1dvoa_ : (LYS35) (THR128) [view usage] : a.136.1.1 |FinO-like |FinO-like |FinO-like |Repressor of bacterial conjugation FinO |Escherichia coli [TaxId: 562]
d1aomb1 : (SER50) (LEU129) [view usage] : a.3.1.2 |Cytochrome c |Cytochrome c |N-terminal (heme c) domain of cytochrome cd1-nitrite reductase |N-terminal (heme c) domain of cytochrome cd1-nitrite reductase |Paracoccus pantotrophus [TaxId: 82367]
d4a69c_ : (PRO419) (ASN476) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2c1db_ : (PRO46) (LEU155) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Paracoccus pantotrophus [TaxId: 82367]
d3poma1 : (GLN383) (ARG455) [view usage] : a.74.1.3 |Cyclin-like |Cyclin-like |Retinoblastoma tumor suppressor domains |Retinoblastoma tumor suppressor domains |Human (Homo sapiens) [TaxId: 9606]
d2ce0a_ : (GLN6) (GLY98) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2cqra1 : (SER16) (LEU66) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |DnaJ homolog subfamily C member 1 |Human (Homo sapiens) [TaxId: 9606]
d3b0ha1 : (PRO46) (GLY94) [view usage] : d.58.36.0 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |automated matches |automated matches |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d3b0hb1 : (PRO46) (GLY94) [view usage] : d.58.36.0 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |automated matches |automated matches |Tobacco (Nicotiana tabacum) [TaxId: 4097]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.2, d.58, c.72, d.20, a.4, a.3, a.74, a.116, a.136, a.204, a.2