Tableau information
Concept source: d3k3ea_ amino acid (a.a.) range (PRO190)(TYR246)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO190) (LEU196) H1
(PRO208) (GLY223) H2
(GLY223) (SER229) H3
(ASN231) (TYR246) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -68.6° H2
H3 79.7° 62.2° H3
H4 69.1° 137.2° 115.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4dnob_ : (ASP158) (ALA208) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]
d4dnod_ : (ASP158) (ALA208) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]
d1u00a1 : (THR505) (GLY575) [view usage] : a.8.4.1 |immunoglobulin/albumin-binding domain-like |Heat shock protein 70kD (HSP70), C-terminal subdomain |Heat shock protein 70kD (HSP70), C-terminal subdomain |Chaperone protein hscA (Hsc66) |Escherichia coli [TaxId: 562]
d3bjva_ : (SER107) (LYS149) [view usage] : d.112.1.0 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d4dhwa_ : (VAL147) (GLN192) [view usage] : c.56.3.0 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2vglm1 : (SER97) (ILE133) [view usage] : d.110.4.2 |Profilin-like |SNARE-like |Clathrin coat assembly domain |Mu2 adaptin (clathrin coat assembly protein AP50) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1oofa_ : (PRO78) (GLU115) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Odorant binding protein LUSH |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4fyja_ : (VAL147) (GLN192) [view usage] : c.56.3.0 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2ezwa1 : (SER12) (GLU58) [view usage] : a.31.1.1 |Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit |Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit |Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit |cAMP-dependent protein kinase type I-alpha regulatory subunit |Cow (Bos taurus) [TaxId: 9913]
d1o7xb_ : (GLY220) (LYS250) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Sulfolobus solfataricus [TaxId: 2287]
d1aqea_ : (GLU68) (HIS109) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio desulfuricans, different strains [TaxId: 876]
d4bzsb_ : (THR206) (ILE264) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kywa2 : (SER125) (TYR158) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d3gxkd_ : (SER17) (SER71) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |automated matches |Atlantic cod (Gadus morhua) [TaxId: 8049]
d1o7xa_ : (GLY220) (LYS250) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Sulfolobus solfataricus [TaxId: 2287]
d1tw2b1 : (ILE13) (THR57) [view usage] : a.4.5.29 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Plant O-methyltransferase, N-terminal domain |Carminomycin 4-O-methyltransferase |Streptomyces peucetius [TaxId: 1950]
d2qyoa2 : (LEU116) (ASN150) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |automated matches |Medicago truncatula [TaxId: 3880]
d3dysa_ : (SER189) (TYR246) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A |Human (Homo sapiens) [TaxId: 9606]
d2hd1a_ : (SER189) (TYR246) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A |Human (Homo sapiens) [TaxId: 9606]
d1iawa_ : (GLU10) (GLU76) [view usage] : c.52.1.9 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease NaeI |Restriction endonuclease NaeI |Nocardia aerocolonigenes [TaxId: 68170]
d1tw2b2 : (GLN102) (TYR137) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Carminomycin 4-O-methyltransferase |Streptomyces peucetius [TaxId: 1950]
d2onkc1 : (ALA127) (VAL182) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |Molybdate/tungstate transport system permease protein WtpB (ModB) |Archaeoglobus fulgidus [TaxId: 2234]
d1ux5a_ : (TYR1538) (PRO1622) [view usage] : a.207.1.1 |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Bni1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3k3ea_ : (PRO190) (TYR246) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A |Human (Homo sapiens) [TaxId: 9606]
d1zj8a4 : (PRO262) (LEU312) [view usage] : d.134.1.1 |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Sulfite reductase NirA |Mycobacterium tuberculosis [TaxId: 1773]
d1wera_ : (THR792) (LEU866) [view usage] : a.116.1.2 |GTPase activation domain, GAP |GTPase activation domain, GAP |p120GAP domain-like |p120GAP domain |Human (Homo sapiens) [TaxId: 9606]
d2j3qa_ : (SER228) (ASP276) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Acetylcholinesterase |Pacific electric ray (Torpedo californica) [TaxId: 7787]
d1mbza1 : (GLY445) (SER503) [view usage] : c.26.2.1 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |N-type ATP pyrophosphatases |beta-Lactam synthetase |Streptomyces clavuligerus [TaxId: 1901]
d1czja_ : (GLU68) (HIS109) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfomicrobium norvegicum [TaxId: 52561]
d4lrlc_ : (ASN96) (THR138) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein EF1143 |Enterococcus faecalis [TaxId: 1351]
d1xm8a_ : (THR210) (ASP253) [view usage] : d.157.1.2 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Glyoxalase II (hydroxyacylglutathione hydrolase) |Glyoxalase II (hydroxyacylglutathione hydrolase) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1ooha_ : (PRO78) (GLU115) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Odorant binding protein LUSH |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1p58d_ : (SER21) (THR75) [view usage] : i.17.1.1 |Virus envelope proteins |Virus envelope proteins |Virus envelope proteins |Virus envelope proteins |Dengue virus [TaxId: 12637]
d1zg3a2 : (LEU119) (ALA154) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d1m56a_ : (GLY15) (PRO82) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Rhodobacter sphaeroides [TaxId: 1063]
d1ej2a_ : (TYR126) (ALA170) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3h0uc_ : (PRO233) (LEU281) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Streptomyces avermitilis [TaxId: 33903]
d4pgga2 : (MET121) (TYR155) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Sorghum (Sorghum bicolor) [TaxId: 4558]
d2qeda1 : (LEU207) (PHE251) [view usage] : d.157.1.2 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Glyoxalase II (hydroxyacylglutathione hydrolase) |Glyoxalase II (hydroxyacylglutathione hydrolase) |Salmonella typhimurium [TaxId: 90371]
d1gpqb_ : (ASN100) (ASN127) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Escherichia coli [TaxId: 562]
d3reoa2 : (LEU127) (TYR161) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |automated matches |Clarkia breweri [TaxId: 36903]
d4be8a_ : (PHE740) (GLY778) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1f6wa_ : (SER225) (LEU268) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Bile-salt activated lipase (cholesterol esterase) |Human (Homo sapiens) [TaxId: 9606]
d2vn0a_ : (PRO220) (THR299) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Mammalian cytochrome p450 2c8 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, a.104, c.26, c.56, d.157, c.66, d.92, c.14, a.211, a.103, d.2, d.110, f.24, d.134, c.52, a.4, a.39, a.138, d.148, a.116,
d.112, i.17, a.8, f.58, d.233, a.207, a.31