Tableau information
Concept source: d3c5aa_ amino acid (a.a.) range (SER106)(GLY156)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER106) (TYR112) H1
(THR118) (SER130) H2
(ASN132) (LEU142) H3
(GLY144) (GLY156) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 144.0° H2
H3 86.1° -128.0° H3
H4 120.9° -85.6° 71.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1pi1a_ : (ASP78) (GLN153) [view usage] : a.29.7.1 |Bromodomain-like |Mob1/phocein |Mob1/phocein |Mob1a |Human (Homo sapiens) [TaxId: 9606]
d1wxla_ : (THR10) (ASN69) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2ly4a_ : (SER13) (TYR77) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3b87a_ : (THR2) (GLN72) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Odorant binding protein LUSH |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1sf9a_ : (GLU16) (SER81) [view usage] : b.34.15.1 |SH3-like barrel |Hypothetical protein YfhH |Hypothetical protein YfhH |Hypothetical protein YfhH |Bacillus subtilis [TaxId: 1423]
d1oofa_ : (THR2) (GLN72) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Odorant binding protein LUSH |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1t33a1 : (THR7) (SER86) [view usage] : a.4.1.9 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Tetracyclin repressor-like, N-terminal domain |Putative transcriptional repressor YbiH |Salmonella typhimurium [TaxId: 90371]
d2crja_ : (THR13) (VAL83) [view usage] : a.21.1.0 |HMG-box |HMG-box |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2qpna_ : (SER100) (GLY151) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Klebsiella pneumoniae
d1jb0b_ : (SER577) (GLY640) [view usage] : f.29.1.1 |Photosystem I subunits PsaA/PsaB |Photosystem I subunits PsaA/PsaB |Photosystem I subunits PsaA/PsaB |Apoprotein a2, PsaB |Synechococcus elongatus [TaxId: 32046]
d1qb2a_ : (LEU329) (SER389) [view usage] : a.36.1.1 |Signal peptide-binding domain |Signal peptide-binding domain |Signal peptide-binding domain |SRP54M |Human (Homo sapiens) [TaxId: 9606]
d3a04a_ : (LEU310) (LEU366) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
d1f4ta_ : (ARG49) (ILE110) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp119 |Sulfolobus solfataricus [TaxId: 2287]
d3qt9a_ : (ILE309) (PHE337) [view usage] : a.102.1.8 |alpha/alpha toroid |Six-hairpin glycosidases |CPF0428-like |Hypothetical protein CPF0428 |Clostridium perfringens [TaxId: 1502]
d2d9ja_ : (PRO58) (GLY135) [view usage] : a.91.1.0 |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2g6ta1 : (ARG258) (GLY297) [view usage] : c.147.1.1 |CAC2185-like |CAC2185-like |CAC2185-like |Hypothetical protein CAC2185 |Clostridium acetobutylicum [TaxId: 1488]
d1q08b_ : (GLN46) (GLN132) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |Transcriptional regulator ZntR |Escherichia coli [TaxId: 562]
d1k99a_ : (THR16) (HIS82) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) |Human (Homo sapiens) [TaxId: 9606]
d2ge8i_ : (LYS31) (PHE65) [view usage] : d.254.1.2 |Nucleocapsid protein dimerization domain |Nucleocapsid protein dimerization domain |Coronavirus nucleocapsid protein |Coronavirus nucleocapsid protein |Avian infectious bronchitis virus [TaxId: 11120]
d3b6xa_ : (THR2) (GLN72) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Odorant binding protein LUSH |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2avwa_ : (HIS121) (HIS168) [view usage] : d.3.1.12 |Cysteine proteinases |Cysteine proteinases |IgG-specific endopeptidase IdeS (Sib38) |automated matches |Streptococcus pyogenes [TaxId: 293653]
d1jwza_ : (SER106) (GLY156) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Escherichia coli, TEM-1 [TaxId: 562]
d1q09a_ : (ARG47) (GLN132) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |Transcriptional regulator ZntR |Escherichia coli [TaxId: 562]
d1ooha_ : (MET3) (GLN72) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Odorant binding protein LUSH |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1dmta_ : (SER58) (VAL120) [view usage] : d.92.1.4 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neutral endopeptidase (neprilysin) |Neutral endopeptidase (neprilysin) |Human (Homo sapiens) [TaxId: 9606]
d2yoob_ : (PRO84) (GLY124) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1n4oa_ : (ALA106) (GLY156) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Stenotrophomonas maltophilia, L2 [TaxId: 40324]
d3sh9b_ : (ASN106) (GLY156) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Bacillus licheniformis [TaxId: 1402]
d1fpza_ : (SER163) (ALA197) [view usage] : c.45.1.1 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Dual specificity phosphatase-like |Kinase associated phosphatase (kap) |Human (Homo sapiens) [TaxId: 9606]
d1t33b1 : (THR7) (SER86) [view usage] : a.4.1.9 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Tetracyclin repressor-like, N-terminal domain |Putative transcriptional repressor YbiH |Salmonella typhimurium [TaxId: 90371]
d1yi8a_ : (ASN258) (ARG347) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Deinococcus radiodurans [TaxId: 243230]
d1q08a_ : (SER43) (GLN132) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |Transcriptional regulator ZntR |Escherichia coli [TaxId: 562]
d2whwa_ : (ASP73) (THR112) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, a.104, c.26, a.102, d.92, c.45, d.3, b.34, a.4, a.39, a.29, a.91, d.254, a.21, f.29, c.147, a.6, a.36