Tableau information
Concept source: d4bpfa_ amino acid (a.a.) range (PHE3)(ASN48)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE3) (CYS15) H1
(ASP18) (ASN23) H2
(GLU27) (GLY32) H3
(ALA36) (ASN48) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 131.7° H2
H3 -7.9° 133.1° H3
H4 142.3° -85.1° 138.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4e4ja_ : (SER131) (PHE201) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Mycoplasma penetrans [TaxId: 272633]
d1ul1y1 : (ASN219) (LEU284) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |Flap endonuclease-1 (Fen-1 nuclease) |Human (Homo sapiens) [TaxId: 9606]
d4bpfa_ : (PHE3) (ASN48) [view usage] : a.28.1.0 |Acyl carrier protein-like |ACP-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d4pj6a2 : (ASP545) (GLN613) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2peic_ : (PHE3) (GLU107) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. pcc 7002 [TaxId: 32049]
d1a76a1 : (SER210) (PRO268) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |Flap endonuclease-1 (Fen-1 nuclease) |Methanococcus jannaschii [TaxId: 2190]
d1mc8a1 : (THR222) (PRO282) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |Flap endonuclease-1 (Fen-1 nuclease) |Pyrococcus horikoshii [TaxId: 53953]
d1ynjd1 : (PRO877) (GLY946) [view usage] : e.29.1.2 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta-prime |RNA-polymerase beta-prime |Thermus aquaticus [TaxId: 271]
d2g77a1 : (GLY379) (THR437) [view usage] : a.69.2.1 |Left-handed superhelix |Ypt/Rab-GAP domain of gyp1p |Ypt/Rab-GAP domain of gyp1p |Ypt/Rab-GAP domain of gyp1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4bpha_ : (ASP2) (ASN48) [view usage] : a.28.1.0 |Acyl carrier protein-like |ACP-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d2fdra1 : (GLU19) (ARG84) [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |Hypothetical protein Atu0790 |Agrobacterium tumefaciens [TaxId: 358]
d3laic_ : (THR4) (PRO83) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d2doba_ : (SER1) (ASN77) [view usage] : a.64.1.1 |Saposin-like |Saposin |NKL-like |Saposin C |Human (Homo sapiens) [TaxId: 9606]
d1z4na_ : (THR16) (ILE84) [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |beta-Phosphoglucomutase |Lactococcus lactis [TaxId: 1358]
d1ryka_ : (ASN9) (ASN65) [view usage] : a.60.11.1 |SAM domain-like |Hypothetical protein YjbJ |Hypothetical protein YjbJ |Hypothetical protein YjbJ |Escherichia coli [TaxId: 562]
d2qi9a_ : (GLY92) (GLY181) [view usage] : f.22.1.1 |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |Escherichia coli [TaxId: 562]
d2lmda_ : (PRO19) (ASN107) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3voya_ : (LEU284) (ALA366) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1z1wa2 : (TYR351) (LYS412) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Tricorn protease interacting factor F3 catalytic domain |Thermoplasma acidophilum [TaxId: 2303]
d4n0fd3 : (LYS389) (HIS464) [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2l3va_ : (ASP4) (PHE48) [view usage] : a.28.1.0 |Acyl carrier protein-like |ACP-like |automated matches |automated matches |Brucella melitensis [TaxId: 520466]
d4fyqa2 : (ALA474) (THR544) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1b43a1 : (THR221) (LEU279) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |Flap endonuclease-1 (Fen-1 nuclease) |Pyrococcus furiosus [TaxId: 2261]
d2hkua2 : (LEU144) (THR208) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Putative transcriptional regulator RHA1_ro03468 |Rhodococcus sp. RHA1 [TaxId: 101510]
d1g4yr_ : (GLU83) (MET145) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2pekb_ : (LYS4) (GLN111) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. [TaxId: 32049]
d4cjaa_ : (TYR732) (LEU767) [view usage] : a.298.1.1 |Left-handed alpha-alpha superhelix |TAL effector-like |TAL (transcription activator-like) effector |BurrH |Burkholderia rhizoxinica [TaxId: 412963]
d2dfka1 : (ARG47) (SER125) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Rho guanine nucleotide exchange factor 9, Collybistin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2rcrl_ : (ALA172) (LEU269) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d4jrrc_ : (TRP100) (ALA157) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
d1ywwa_ : (LYS9) (ARG64) [view usage] : a.60.11.0 |SAM domain-like |Hypothetical protein YjbJ |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1hkoa_ : (THR37) (ILE79) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |Cytochrome b5 |Cow (Bos taurus) [TaxId: 9913]
d2dfkc1 : (ARG47) (SER125) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Rho guanine nucleotide exchange factor 9, Collybistin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3b7sa3 : (SER380) (GLN441) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Leukotriene A4 hydrolase catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2wf5a_ : (THR16) (ILE84) [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |beta-Phosphoglucomutase |Lactococcus lactis [TaxId: 1358]
d4it2a_ : (ILE5) (PRO83) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d4gaaa2 : (VAL378) (VAL439) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1dv5a_ : (GLU4) (GLY54) [view usage] : a.28.1.3 |Acyl carrier protein-like |ACP-like |apo-D-alanyl carrier protein |apo-D-alanyl carrier protein |Lactobacillus casei [TaxId: 1582]
d1gw6a3 : (VAL381) (GLN441) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Leukotriene A4 hydrolase catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1rxva1 : (THR221) (LEU280) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |Flap endonuclease-1 (Fen-1 nuclease) |Archaeoglobus fulgidus [TaxId: 2234]
d2floa1 : (ARG315) (SER392) [view usage] : a.211.1.5 |HD-domain/PDEase-like |HD-domain/PDEase-like |Ppx associated domain |Exopolyphosphatase Ppx C-terminal domain |Escherichia coli [TaxId: 562]
d1x3oa_ : (GLU3) (GLU44) [view usage] : a.28.1.1 |Acyl carrier protein-like |ACP-like |Acyl-carrier protein (ACP) |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3voza_ : (LEU284) (ALA366) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3dxjd_ : (GLY878) (SER945) [view usage] : e.29.1.2 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta-prime |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1fkma1 : (GLY379) (THR437) [view usage] : a.69.2.1 |Left-handed superhelix |Ypt/Rab-GAP domain of gyp1p |Ypt/Rab-GAP domain of gyp1p |Ypt/Rab-GAP domain of gyp1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3q7ja2 : (ASP347) (LYS412) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 273075]
d1ul1x1 : (ASN219) (LEU284) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |Flap endonuclease-1 (Fen-1 nuclease) |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.298, e.3, c.108, d.92, a.211, c.47, f.26, d.126, a.126, d.278, a.4, a.39, a.87, d.120, a.60, a.28, a.280, f.22, a.69, a.64,
a.121, e.29