Tableau information
Concept source: d2rd6a1 amino acid (a.a.) range (ARG43)(LYS135)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG43) (GLN61) H1
(ASP65) (ILE79) H2
(ASN93) (ARG118) H3
(ILE129) (LYS135) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -162.3° H2
H3 -172.4° 19.7° H3
H4 -48.1° 142.7° 126.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3weka_ : (ILE270) (MET326) [view usage] : a.128.1.2 |Terpenoid synthases |Terpenoid synthases |Squalene synthase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zp0f_ : (VAL48) (GLY155) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
d1vqrc_ : (THR110) (ASN173) [view usage] : a.211.1.3 |HD-domain/PDEase-like |HD-domain/PDEase-like |modified HD domain |Hypothetical protein Cj0248 |Campylobacter jejuni [TaxId: 197]
d1prga_ : (THR349) (SER394) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor gamma, PPAR-gamma |Human (Homo sapiens) [TaxId: 9606]
d1nf6o_ : (ASP95) (ALA158) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |Bacterioferritin (cytochrome b1) |Desulfovibrio desulfuricans [TaxId: 876]
d1gu9b_ : (ASN116) (LEU174) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
d3kjdb1 : (VAL272) (ASN364) [view usage] : a.41.1.0 |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kcza1 : (VAL272) (ASN364) [view usage] : a.41.1.0 |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4jazb_ : (ASP251) (MET334) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor gamma, PPAR-gamma |Human (Homo sapiens) [TaxId: 9606]
d1w07b1 : (PHE335) (LEU405) [view usage] : a.29.3.2 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |acyl-CoA oxidase C-terminal domains |Acyl-coenzyme A oxidase 1, domains 3 and 4 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1hs6a3 : (GLY357) (SER415) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Leukotriene A4 hydrolase catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1u5wh_ : (PRO110) (ASN170) [view usage] : c.51.4.3 |Anticodon-binding domain-like |ITPase-like |YjjX-like |Hypothetical protein YjjX |Escherichia coli [TaxId: 562]
d1u14a_ : (PRO107) (HIS166) [view usage] : c.51.4.3 |Anticodon-binding domain-like |ITPase-like |YjjX-like |Hypothetical protein YjjX |Salmonella typhimurium [TaxId: 90371]
d3weia_ : (ILE270) (MET326) [view usage] : a.128.1.2 |Terpenoid synthases |Terpenoid synthases |Squalene synthase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3q2za_ : (ILE270) (GLY312) [view usage] : a.128.1.2 |Terpenoid synthases |Terpenoid synthases |Squalene synthase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kczb1 : (VAL272) (ASN364) [view usage] : a.41.1.0 |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2g0ua1 : (TRP14) (ASP81) [view usage] : a.2.20.1 |Long alpha-hairpin |MxiH-like |MxiH-like |BsaL needle protein |Burkholderia pseudomallei [TaxId: 28450]
d2rd6a1 : (ARG43) (LYS135) [view usage] : a.41.1.1 |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Human (Homo sapiens) [TaxId: 9606]
d1woka1 : (SER702) (LYS796) [view usage] : a.41.1.0 |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1neqa_ : (HIS10) (ALA42) [view usage] : a.35.1.2 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Phage repressors |Ner |Bacteriophage Mu [TaxId: 10677]
d3l3ma1 : (SER41) (LYS135) [view usage] : a.41.1.1 |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Human (Homo sapiens) [TaxId: 9606]
d3fr3a2 : (SER89) (ASP146) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.128, d.92, a.211, a.123, a.25, c.51, a.152, h.3, a.45, a.29, a.35, a.2, a.41