Tableau information
Concept source: d3ds5a_ amino acid (a.a.) range (PHE161)(CYS218)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE161) (GLN176) H1
(SER178) (ALA194) H2
(PRO196) (GLY206) H3
(THR210) (CYS218) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 141.3° H2
H3 -77.8° -123.1° H3
H4 147.5° 19.0° 132.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4oltb_ : (SER111) (GLU199) [view usage] : d.2.1.7 |Lysozyme-like |Lysozyme-like |Chitosanase |automated matches |Pseudomonas sp. [TaxId: 878476]
d1baja_ : (PHE161) (CYS218) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |HIV capsid protein, dimerisation domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d1zq1c1 : (LEU458) (GLY512) [view usage] : a.182.1.2 |GatB/YqeY motif |GatB/YqeY motif |GatB/GatE C-terminal domain-like |Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain |Pyrococcus abyssi [TaxId: 29292]
d1e7da1 : (ASN107) (LYS157) [view usage] : a.140.4.1 |LEM/SAP HeH motif |Recombination endonuclease VII, C-terminal and dimerization domains |Recombination endonuclease VII, C-terminal and dimerization domains |Recombination endonuclease VII, C-terminal and dimerization domains |Bacteriophage T4 [TaxId: 10665]
d3g1ia_ : (PHE164) (GLN226) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |automated matches |Rous sarcoma virus [TaxId: 11888]
d1a43a_ : (PHE161) (CYS218) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |HIV capsid protein, dimerisation domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d1eoqa_ : (SER163) (LYS227) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |RSV capsid protein |Rous sarcoma virus [TaxId: 11886]
d2koda_ : (PHE161) (GLN219) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |automated matches |Hiv-1 m:b_hxb2r [TaxId: 11706]
d2buoa_ : (PHE161) (ALA217) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |automated matches |Human immunodeficiency virus 1 [TaxId: 11676]
d1a8oa_ : (PHE161) (CYS218) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |HIV capsid protein, dimerisation domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d3g1gb_ : (SER163) (ARG225) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |automated matches |Rous sarcoma virus [TaxId: 11888]
d3obba1 : (ALA166) (GLU227) [view usage] : a.100.1.1 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain |Hydroxyisobutyrate dehydrogenase |Pseudomonas aeruginosa [TaxId: 287]
d1e6jp1 : (PHE161) (ALA217) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |HIV capsid protein, dimerisation domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d1auma_ : (PHE161) (CYS218) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |HIV capsid protein, dimerisation domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d2i5ua1 : (ILE2) (GLY72) [view usage] : a.275.1.1 |DnaD domain-like |DnaD domain-like |DnaD domain |Uncaracterized protein EF2839 |Enterococcus faecalis [TaxId: 1351]
d2zy9a1 : (PRO53) (ALA96) [view usage] : a.118.26.1 |alpha-alpha superhelix |MgtE N-terminal domain-like |MgtE N-terminal domain-like |Magnesium transporter MgtE |Thermus thermophilus [TaxId: 274]
d2eiab1 : (TYR161) (ARG219) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |EIAV capsid protein p26 |Equine infectious anemia virus [TaxId: 11665]
d2df4b1 : (ASP297) (GLY346) [view usage] : a.182.1.2 |GatB/YqeY motif |GatB/YqeY motif |GatB/GatE C-terminal domain-like |Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d4wymb2 : (PHE161) (CYS218) [view usage] : a.28.3.0 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |automated matches |automated matches |Human immunodeficiency virus type 1 group m subtype b [TaxId: 11698]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.118, d.2, a.100, a.28, a.140, a.182, a.275