Tableau information
Concept source: d2r82a3 amino acid (a.a.) range (ASP142)(ASN217)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP142) (GLU146) H1
(SER150) (GLY164) H2
(THR172) (MET191) H3
(GLU199) (ASN217) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 132.8° H2
H3 16.6° 149.4° H3
H4 66.8° -122.0° 62.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1g8qa_ : (ALA140) (SER199) [view usage] : a.135.1.1 |Tetraspanin |Tetraspanin |Tetraspanin |CD81 extracellular domain |Human (Homo sapiens) [TaxId: 9606]
d1kb2b_ : (CYS241) (MET306) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Vitamin D3 receptor, VDR, DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d2o36a_ : (ASP606) (GLY676) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Neurolysin (endopeptidase 24.16, thimet oligopeptidase) |Human (Homo sapiens) [TaxId: 9606]
d4e5oa_ : (ARG101) (ARG134) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1qyia_ : (SER76) (ASP138) [view usage] : c.108.1.13 |HAD-like |HAD-like |Hypothetical protein MW1667 (SA1546) |Hypothetical protein MW1667 (SA1546) |Staphylococcus aureus [TaxId: 1280]
d2o3ea_ : (ASP607) (GLY677) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1keaa_ : (ALA145) (CYS219) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |Thymine-DNA glycosylase |Methanobacterium thermoformicicum [TaxId: 145262]
d1rrsa1 : (GLY145) (GLY220) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |Catalytic domain of MutY |Bacillus stearothermophilus [TaxId: 1422]
d3feua_ : (ASN60) (GLY146) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Vibrio fischeri [TaxId: 312309]
d3wsvb2 : (THR149) (TYR234) [view usage] : d.162.1.0 |LDH C-terminal domain-like |LDH C-terminal domain-like |automated matches |automated matches |Enterococcus mundtii [TaxId: 53346]
d2yiag_ : (SER723) (LYS791) [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Infectious pancreatic necrosis virus [TaxId: 11002]
d2yiaa_ : (SER723) (LYS791) [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Infectious pancreatic necrosis virus [TaxId: 11002]
d1ggoa3 : (ASN125) (ASN217) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d3g0qa1 : (ASP144) (GLY220) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |Catalytic domain of MutY |Bacillus stearothermophilus [TaxId: 1422]
d2c6fb_ : (LEU507) (TYR573) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rrqa1 : (GLY145) (GLY220) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |Catalytic domain of MutY |Bacillus stearothermophilus [TaxId: 1422]
d3j3bs_ : (ALA8) (ASN62) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Homo sapiens [TaxId: 9606]
d3d0ga_ : (ILE513) (PHE588) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme 2, ACE2 |Paguma larvata
d2r82a3 : (ASP142) (ASN217) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d4fxyp_ : (ASP607) (GLY677) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2yiaf_ : (SER723) (LYS791) [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Infectious pancreatic necrosis virus [TaxId: 11002]
d1s4bp_ : (ASP606) (GLY676) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Neurolysin (endopeptidase 24.16, thimet oligopeptidase) |Human (Homo sapiens) [TaxId: 9606]
d4n21a_ : (LEU231) (GLU351) [view usage] : h.3.2.0 |Stalk segment of viral fusion proteins |Virus ectodomain |automated matches |automated matches |Cas virus [TaxId: 1223561]
d1xwob_ : (SER112) (SER234) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |automated matches |Anser anser [TaxId: 8844]
d3zedb_ : (SER723) (THR791) [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Infectious pancreatic necrosis virus [TaxId: 11002]
d1i1ip_ : (ASP607) (GLY677) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Neurolysin (endopeptidase 24.16, thimet oligopeptidase) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3scka_ : (ILE513) (TYR587) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme 2, ACE2 |Paguma larvata
d1r42a_ : (ILE513) (PHE588) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme 2, ACE2 |Human (Homo sapiens) [TaxId: 9606]
d1d8ja_ : (PHE10) (ARG81) [view usage] : a.4.5.18 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |The central core domain of TFIIE beta |The central core domain of TFIIE beta |Human (Homo sapiens) [TaxId: 9606]
d3j3bu_ : (ARG2) (ALA56) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Homo sapiens [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, i.1, c.108, d.117, d.92, a.127, c.47, a.96, d.142, a.4, d.162, h.3, g.39, a.135