Tableau information
Concept source: d1rp3a2 amino acid (a.a.) range (ASN164)(ASN234)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN164) (LEU185) H1
(GLU187) (GLU200) H2
(PRO202) (GLU211) H3
(SER213) (ASN234) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 139.3° H2
H3 -50.3° 129.2° H3
H4 126.0° -93.1° 113.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2etha1 : (ASN24) (GLY74) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Putative transcriptional regulator TM0816 |Thermotoga maritima [TaxId: 2336]
d1rbla1 : (GLY403) (LEU461) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Synechococcus sp., strain pcc 6301 [TaxId: 1131]
d1rbob1 : (GLY403) (TRP462) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Spinach (Spinacia oleracea) [TaxId: 3562]
d1sv4a_ : (SER55) (HIS118) [view usage] : a.60.1.1 |SAM domain-like |SAM/Pointed domain |Pointed domain |Ets DNA-binding protein pokkuri (Yan) |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4g7hf3 : (SER340) (ARG414) [view usage] : a.4.13.0 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2b0la1 : (MET167) (GLY228) [view usage] : a.4.5.66 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |CodY HTH domain |GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain |Bacillus subtilis [TaxId: 1423]
d2jscb_ : (ALA10) (SER56) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2fusa_ : (LEU412) (TRP453) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Fumarase |Escherichia coli [TaxId: 562]
d1ynrb_ : (ASN1) (ILE79) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c552 |Hydrogenobacter thermophilus [TaxId: 940]
d1sv0b_ : (SER55) (SER117) [view usage] : a.60.1.1 |SAM domain-like |SAM/Pointed domain |Pointed domain |Ets DNA-binding protein pokkuri (Yan) |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3bzca3 : (ASP2) (GLY85) [view usage] : a.294.1.1 |Tex N-terminal region-like |Tex N-terminal region-like |Tex N-terminal region-like |Transcriptional accessory factor Tex |Pseudomonas aeruginosa [TaxId: 287]
d1rp3g2 : (VAL169) (PRO235) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |Sigma factor sigma-28 (FliA) |Aquifex aeolicus [TaxId: 63363]
d1k6ma1 : (ASP162) (GLU200) [view usage] : c.37.1.7 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain |6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain |Human (Homo sapiens) [TaxId: 9606]
d3eyya_ : (SER3) (GLY66) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d2d0sa_ : (ASP1) (THR77) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Hydrogenophilus thermoluteolus [TaxId: 297]
d1ttya_ : (ARG321) (LEU378) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |Sigma70 (SigA, RpoD) |Thermotoga maritima [TaxId: 2336]
d1kq7a_ : (LEU412) (SER452) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Fumarase |Escherichia coli [TaxId: 562]
d1ku3a_ : (LYS371) (GLU427) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |Sigma70 (SigA, RpoD) |Thermus aquaticus [TaxId: 271]
d1sc5a2 : (GLU168) (SER233) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |Sigma factor sigma-28 (FliA) |Aquifex aeolicus [TaxId: 63363]
d2wlvb_ : (ARG69) (ARG142) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |automated matches |Human immunodeficiency virus type 2 (isolate d194) [TaxId: 11713]
d2jnxa_ : (PHE6) (LYS66) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d1r45a_ : (ASN51) (MET118) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Exoenzyme c3 |Clostridium botulinum C bacteriophage [TaxId: 12336]
d1or7b1 : (SER124) (ARG190) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |SigmaE factor (RpoE) |Escherichia coli [TaxId: 562]
d4mkva2 : (GLY403) (TRP462) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |automated matches |Pea (Pisum sativum) [TaxId: 3888]
d1rioh_ : (SER366) (TYR425) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |Sigma70 (SigA, RpoD) |Thermus aquaticus [TaxId: 271]
d1heka_ : (THR6) (GLY88) [view usage] : a.61.1.5 |Retroviral matrix proteins |Retroviral matrix proteins |EIAV matrix antigen |EIAV matrix antigen |Equine infectious anemia virus, EIAV [TaxId: 11665]
d2gz4b_ : (VAL56) (LEU151) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein Atu1052 |Agrobacterium tumefaciens [TaxId: 358]
d2h27a1 : (MET122) (VAL185) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |SigmaE factor (RpoE) |Escherichia coli [TaxId: 562]
d1nzpa_ : (LEU254) (SER319) [view usage] : a.60.6.1 |SAM domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d2rnja_ : (GLU143) (GLU191) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d4oiof3 : (SER340) (THR415) [view usage] : a.4.13.0 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |automated matches |automated matches |Thermus thermophilus [TaxId: 300852]
d1yioa1 : (GLU131) (ASN186) [view usage] : a.4.6.2 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |GerE-like (LuxR/UhpA family of transcriptional regulators) |Response regulatory protein StyR, C-terminal domain |Pseudomonas fluorescens [TaxId: 294]
d1rg6a_ : (ILE10) (HIS69) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |C-terminal domain of p63 |Human (Homo sapiens) [TaxId: 9606]
d3gbua_ : (THR242) (VAL303) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d1rp3a2 : (ASN164) (ASN234) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |Sigma factor sigma-28 (FliA) |Aquifex aeolicus [TaxId: 63363]
d2esnb1 : (HIS2) (GLY49) [view usage] : a.4.5.37 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |LysR-like transcriptional regulators |Probable LysR-type transcriptional regulator PA0477 |Pseudomonas aeruginosa [TaxId: 287]
d4a3na_ : (ASN73) (ASP131) [view usage] : a.21.1.0 |HMG-box |HMG-box |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2lkpa_ : (ASP16) (GLY74) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1b22a_ : (SER26) (LEU81) [view usage] : a.60.4.1 |SAM domain-like |Rad51 N-terminal domain-like |DNA repair protein Rad51, N-terminal domain |DNA repair protein Rad51, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4g7hf1 : (THR95) (SER165) [view usage] : a.177.1.0 |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1rp3c2 : (ASN164) (PRO235) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |Sigma factor sigma-28 (FliA) |Aquifex aeolicus [TaxId: 63363]
d1mwka2 : (VAL199) (ASN268) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Plasmid segregation protein ParM |Escherichia coli [TaxId: 562]
d4g6da_ : (GLU540) (ARG597) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |automated matches |Staphylococcus aureus [TaxId: 93061]
d2zvic2 : (GLY361) (TRP408) [view usage] : c.1.14.0 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1hyob1 : (LYS547) (LEU588) [view usage] : b.34.8.1 |SH3-like barrel |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1rp3e2 : (ASN164) (ASN234) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |Sigma factor sigma-28 (FliA) |Aquifex aeolicus [TaxId: 63363]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, a.127, a.211, c.72, c.37, c.55, d.166, b.34, a.4, a.39, a.3, a.73, a.60, a.61, a.21, a.294, a.177