Tableau information
Concept source: d1fqvb1 amino acid (a.a.) range (PRO86)(THR138)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO86) (LYS94) H1
(GLN97) (ASP111) H2
(ILE112) (LYS128) H3
(THR131) (THR138) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 116.2° H2
H3 -73.6° -146.7° H3
H4 61.9° -80.6° 128.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2f2ab1 : (ASP336) (GLY408) [view usage] : a.182.1.2 |GatB/YqeY motif |GatB/YqeY motif |GatB/GatE C-terminal domain-like |Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d2dqnb1 : (ASP336) (ASN407) [view usage] : a.182.1.2 |GatB/YqeY motif |GatB/YqeY motif |GatB/GatE C-terminal domain-like |Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d2e21a2 : (ASN218) (GLY293) [view usage] : d.229.1.1 |MesJ substrate recognition domain-like |MesJ substrate recognition domain-like |MesJ substrate recognition domain-like |TilS-like protein Aq_1887 |Aquifex aeolicus [TaxId: 63363]
d1rlcl1 : (ASN413) (ILE465) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097]
d3wcyi_ : (TYR3) (SER111) [view usage] : a.26.1.3 |4-helical cytokines |4-helical cytokines |Interferons/interleukin-10 (IL-10) |Interferon-beta |Mouse (Mus musculus) [TaxId: 10090]
d1eija_ : (LYS9) (ALA69) [view usage] : a.5.6.1 |RuvA C-terminal domain-like |Double-stranded DNA-binding domain |Double-stranded DNA-binding domain |Hypothetical protein MTH1615 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2pf4a_ : (GLY435) (THR481) [view usage] : a.118.1.2 |alpha-alpha superhelix |ARM repeat |HEAT repeat |Constant regulatory domain of protein phosphatase 2a, pr65alpha |Mouse (Mus musculus) [TaxId: 10090]
d1ohub_ : (PHE146) (LYS242) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |Apoptosis regulator ced-9 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1nu5a2 : (SER59) (GLY125) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Chlormuconate cycloisomerase |Pseudomonas sp. p51 [TaxId: 65067]
d1bs9a_ : (ASP175) (LEU206) [view usage] : c.69.1.30 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Cutinase-like |Acetylxylan esterase |Penicillium purpurogenum [TaxId: 28575]
d1e0ha_ : (SER6) (TYR54) [view usage] : a.28.2.1 |Acyl carrier protein-like |Colicin E immunity proteins |Colicin E immunity proteins |ImmE9 protein (Im9) |Escherichia coli [TaxId: 562]
d2nppb1 : (ASN342) (LYS414) [view usage] : a.118.1.20 |alpha-alpha superhelix |ARM repeat |B56-like |Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma |Human (Homo sapiens) [TaxId: 9606]
d2nxpe_ : (ASP197) (GLN271) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |TAF5 subunit of TFIID |Human (Homo sapiens) [TaxId: 9606]
d1r6ra_ : (ASN21) (ARG97) [view usage] : a.190.1.1 |Flavivirus capsid protein C |Flavivirus capsid protein C |Flavivirus capsid protein C |Flavivirus capsid protein C |Dengue virus type 2 [TaxId: 11060]
d4cbya_ : (THR707) (PHE746) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4b6ga_ : (PRO178) (GLY207) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Neisseria meningitidis [TaxId: 122586]
d1by8a_ : (LEU7) (GLN73) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
d1fs1d1 : (PRO86) (ASN140) [view usage] : a.157.1.1 |Skp1 dimerisation domain-like |Skp1 dimerisation domain-like |Skp1 dimerisation domain-like |Cyclin A/CDK2-associated p45, Skp1 |Human (Homo sapiens) [TaxId: 9606]
d1afha_ : (CYS4) (GLY76) [view usage] : a.52.1.1 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Plant lipid-transfer and hydrophobic proteins |Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) |Maize (Zea mays) [TaxId: 4577]
d1wera_ : (SER724) (GLU781) [view usage] : a.116.1.2 |GTPase activation domain, GAP |GTPase activation domain, GAP |p120GAP domain-like |p120GAP domain |Human (Homo sapiens) [TaxId: 9606]
d7pcka_ : (LEU7) (GLN73) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
d3hb6a_ : (PHE419) (GLU479) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Proteus mirabilis [TaxId: 584]
d3ov2a2 : (GLY280) (LEU324) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Curcuma longa [TaxId: 136217]
d1c1ka_ : (LYS110) (GLN177) [view usage] : a.120.1.1 |gene 59 helicase assembly protein |gene 59 helicase assembly protein |gene 59 helicase assembly protein |gene 59 helicase assembly protein |Bacteriophage T4 [TaxId: 10665]
d1jkya3 : (ASP305) (SER364) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Anthrax toxin lethal factor, middle domain |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2nylb1 : (TYR344) (GLU415) [view usage] : a.118.1.20 |alpha-alpha superhelix |ARM repeat |B56-like |Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma |Human (Homo sapiens) [TaxId: 9606]
d1fs1b1 : (PRO86) (ASN140) [view usage] : a.157.1.1 |Skp1 dimerisation domain-like |Skp1 dimerisation domain-like |Skp1 dimerisation domain-like |Cyclin A/CDK2-associated p45, Skp1 |Human (Homo sapiens) [TaxId: 9606]
d4cbyb_ : (THR707) (PHE746) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2wdqd_ : (GLY12) (VAL115) [view usage] : f.21.2.2 |Heme-binding four-helical bundle |Fumarate reductase respiratory complex transmembrane subunits |Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) |Succinate dehydrogenase subunit SdhD |Escherichia coli [TaxId: 562]
d2e31b2 : (TRP88) (ASN140) [view usage] : a.157.1.1 |Skp1 dimerisation domain-like |Skp1 dimerisation domain-like |Skp1 dimerisation domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nekd_ : (GLY12) (VAL115) [view usage] : f.21.2.2 |Heme-binding four-helical bundle |Fumarate reductase respiratory complex transmembrane subunits |Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) |Succinate dehydrogenase subunit SdhD |Escherichia coli [TaxId: 562]
d3rubl1 : (ALA414) (VAL466) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.5, c.1, c.69, a.118, c.42, d.166, c.95, d.3, f.21, f.1, d.54, a.116, a.26, a.28, a.52, a.157, d.379, a.5, a.190, a.182,
d.229, a.120