Tableau information
Concept source: d1abva_ amino acid (a.a.) range (ASN40)(ALA104)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN40) (GLY49) H1
(ALA52) (GLY65) H2
(ASP69) (GLY83) H3
(ALA87) (ALA104) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 148.4° H2
H3 -61.6° 149.1° H3
H4 110.0° -55.6° 138.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4im9a_ : (LEU34) (TRP85) [view usage] : a.236.1.0 |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |automated matches |automated matches |Vibrio cholerae [TaxId: 345073]
d1ou5a1 : (LEU246) (VAL298) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |tRNA CCA-adding enzyme, C-terminal domains |Human (Homo sapiens), mitochondrial [TaxId: 9606]
d3dhia_ : (GLU303) (GLY370) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Pseudomonas mendocina [TaxId: 300]
d2bymb_ : (ILE15) (VAL95) [view usage] : a.22.1.3 |Histone-fold |Histone-fold |TBP-associated factors, TAFs |Chrac-14 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2l6ea_ : (TYR169) (GLY220) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |automated matches |Human immunodeficiency virus 1 [TaxId: 11676]
d1n1ja_ : (PRO58) (GLU141) [view usage] : a.22.1.3 |Histone-fold |Histone-fold |TBP-associated factors, TAFs |Nuclear transcription factor Y subunit beta (Nf-Yb3) |Human (Homo sapiens) [TaxId: 9606]
d1ggwa_ : (ASP75) (ALA140) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Cdc4p |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d4pj0u_ : (ILE32) (GLU77) [view usage] : a.60.12.2 |SAM domain-like |PsbU/PolX domain-like |PsbU-like |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d4p39c_ : (THR678) (ASN741) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |C5a anaphylotoxin |Human (Homo sapiens) [TaxId: 9606]
d2bykd_ : (PRO11) (GLU98) [view usage] : a.22.1.3 |Histone-fold |Histone-fold |TBP-associated factors, TAFs |Chrac-14 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3hqaa_ : (LEU2) (SER66) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |C5a anaphylotoxin |Human (Homo sapiens) [TaxId: 9606]
d1vfga1 : (GLU229) (MET293) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase PcnB |Aquifex aeolicus [TaxId: 63363]
d1me5c_ : (MET104) (ILE171) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
d2p4wb_ : (PRO105) (LEU198) [view usage] : a.4.5.64 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |PF1790-like |Transcriptional regulatory protein PF1790 |Pyrococcus furiosus [TaxId: 2261]
d2q0ta1 : (GLY47) (GLY126) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Hypothetical protein Bxeno_B2006 |Burkholderia xenovorans [TaxId: 36873]
d1miya1 : (LYS230) (ILE291) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |tRNA CCA-adding enzyme, C-terminal domains |Bacillus stearothermophilus [TaxId: 1422]
d2p4wa_ : (SER104) (PHE197) [view usage] : a.4.5.64 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |PF1790-like |Transcriptional regulatory protein PF1790 |Pyrococcus furiosus [TaxId: 2261]
d1dg3a1 : (GLY290) (VAL413) [view usage] : a.114.1.1 |Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain |Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain |Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain |Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4e6tc_ : (ILE198) (GLU254) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d2bymd_ : (ASN12) (LYS97) [view usage] : a.22.1.3 |Histone-fold |Histone-fold |TBP-associated factors, TAFs |Chrac-14 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4g7hp1 : (ASP152) (ALA252) [view usage] : a.177.1.0 |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1miva1 : (LEU236) (ILE291) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |tRNA CCA-adding enzyme, C-terminal domains |Bacillus stearothermophilus [TaxId: 1422]
d3kphb_ : (ASP155) (PHE211) [view usage] : a.202.1.1 |Superantigen MAM |Superantigen MAM |Superantigen MAM |automated matches |Mycoplasma arthritidis [TaxId: 2111]
d4hxka_ : (THR60) (ILE101) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qssa1 : (GLU337) (PRO387) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of prokaryotic DNA polymerase |Thermus aquaticus [TaxId: 271]
d2fe3a_ : (LEU6) (MET54) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d2heta_ : (LYS37) (SER94) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Recoverin |Cow (Bos taurus) [TaxId: 9913]
d4eqyc_ : (VAL196) (SER257) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1m6na2 : (GLU672) (PHE774) [view usage] : a.172.1.1 |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Bacillus subtilis [TaxId: 1423]
d1vbga3 : (GLU119) (SER193) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Maize (Zea mays) [TaxId: 4577]
d1r5za_ : (THR247) (VAL320) [view usage] : f.40.1.1 |V-type ATP synthase subunit C |V-type ATP synthase subunit C |V-type ATP synthase subunit C |V-type ATP synthase subunit C |Thermus thermophilus [TaxId: 274]
d2g8lb_ : (ASP69) (LEU129) [view usage] : e.50.1.1 |AF1104-like |AF1104-like |AF1104-like |Hypothetical protein PH1575 |Pyrococcus horikoshii [TaxId: 53953]
d1xqoa_ : (LEU84) (SER156) [view usage] : a.96.1.6 |DNA-glycosylase |DNA-glycosylase |AgoG-like |8-oxoguanine DNA glycosylase, AgoG |Pyrobaculum aerophilum [TaxId: 13773]
d1abva_ : (ASN40) (ALA104) [view usage] : a.70.1.1 |ATPD N-terminal domain-like |N-terminal domain of the delta subunit of the F1F0-ATP synthase |N-terminal domain of the delta subunit of the F1F0-ATP synthase |N-terminal domain of the delta subunit of the F1F0-ATP synthase |Escherichia coli [TaxId: 562]
d2ghbb_ : (ASN118) (GLY205) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1xqpa_ : (CYS85) (SER156) [view usage] : a.96.1.6 |DNA-glycosylase |DNA-glycosylase |AgoG-like |8-oxoguanine DNA glycosylase, AgoG |Pyrobaculum aerophilum [TaxId: 13773]
d1agma_ : (SER42) (GLU106) [view usage] : a.102.1.1 |alpha/alpha toroid |Six-hairpin glycosidases |Glucoamylase |Glucoamylase |Aspergillus awamori, variant x100 [TaxId: 105351]
d4cbyd_ : (THR707) (VAL747) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bykb1 : (PRO11) (LYS99) [view usage] : a.22.1.3 |Histone-fold |Histone-fold |TBP-associated factors, TAFs |Chrac-14 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2q0tb_ : (GLY47) (SER104) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Hypothetical protein Bxeno_B2006 |Burkholderia xenovorans [TaxId: 36873]
d1lxaa_ : (ILE199) (SER256) [view usage] : b.81.1.1 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |UDP N-acetylglucosamine acyltransferase |UDP N-acetylglucosamine acyltransferase |Escherichia coli, gene lpxA [TaxId: 562]
d1asha_ : (ALA0) (TYR50) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Ascaris hemoglobin, domain 1 |Pig roundworm (Ascaris suum) [TaxId: 6253]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.81, c.94, a.102, c.42, c.55, a.96, a.25, d.142, a.152, a.1, a.4, a.39, a.29, e.50, a.60, a.28, a.22, a.177, a.114, f.40,
a.70, a.173, a.236, a.202, a.172, a.50