Tableau information
Concept source: d2r1jl_ amino acid (a.a.) range (MET6)(GLN58)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET6) (LYS18) H1
(GLN21) (VAL28) H2
(ASN32) (SER41) H3
(GLY47) (GLN58) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 102.8° H2
H3 -125.9° 104.7° H3
H4 36.7° 118.8° -89.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2jt3a_ : (GLU40) (SER89) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wh6a_ : (ASP18) (GLN83) [view usage] : a.35.1.7 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |CUT domain |Homeobox protein Cux-2, CUTL2 |Human (Homo sapiens) [TaxId: 9606]
d2auwa1 : (HIS90) (THR142) [view usage] : a.35.1.10 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |NE0471 C-terminal domain-like |Hypothetical protein NE0471 C-terminal domain |Nitrosomonas europaea [TaxId: 915]
d1qqva_ : (LYS38) (GLY74) [view usage] : a.14.1.1 |VHP, Villin headpiece domain |VHP, Villin headpiece domain |VHP, Villin headpiece domain |Villin |Chicken (Gallus gallus) [TaxId: 9031]
d3myab_ : (LYS38) (GLY74) [view usage] : a.14.1.1 |VHP, Villin headpiece domain |VHP, Villin headpiece domain |VHP, Villin headpiece domain |Villin |Chicken (Gallus gallus) [TaxId: 9031]
d2ixga_ : (SER571) (LYS637) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1m1lc_ : (CYS204) (ASP262) [view usage] : d.260.1.1 |Suppressor of Fused, N-terminal domain |Suppressor of Fused, N-terminal domain |Suppressor of Fused, N-terminal domain |Suppressor of Fused, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1zu1a1 : (GLY16) (ASN69) [view usage] : g.37.1.4 |beta-beta-alpha zinc fingers |beta-beta-alpha zinc fingers |HkH motif-containing C2H2 finger |dsRNA-binding protein ZFa (ZNF346, JAZ) |African clawed frog (Xenopus laevis) [TaxId: 8355]
d3uqyl_ : (PRO412) (GLY480) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1o4xa2 : (LEU10) (ALA78) [view usage] : a.35.1.1 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |POU-specific domain |Oct-1 |Human (Homo sapiens) [TaxId: 9606]
d2o38b_ : (ASP29) (LEU91) [view usage] : a.35.1.13 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |NE1354 |Hypothetical protein RPA3824 |Rhodopseudomonas palustris [TaxId: 1076]
d1s4ka_ : (ASN3) (ILE74) [view usage] : a.35.1.6 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |YdiL-like |Putative cytoplasmic protein YdiL |Salmonella typhimurium [TaxId: 90371]
d1gt0c2 : (SER4) (LEU77) [view usage] : a.35.1.1 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |POU-specific domain |Oct-1 |Human (Homo sapiens) [TaxId: 9606]
d1au7b2 : (GLY5) (ALA74) [view usage] : a.35.1.1 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |POU-specific domain |Pit-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ic8b2 : (ASP111) (HIS179) [view usage] : a.35.1.1 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |POU-specific domain |Hepatocyte nuclear factor 1a (LFB1/HNF1) |Human (Homo sapiens) [TaxId: 9606]
d4kila_ : (SER0) (ASP50) [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza a virus (a/lima/wrair1695p/2009(h1n1)) [TaxId: 985958]
d2oa4a1 : (ARG44) (ARG91) [view usage] : a.4.12.3 |DNA/RNA-binding 3-helical bundle |TrpR-like |SPO1678-like |Uncharacterized protein SPO1678 |Silicibacter pomeroyi [TaxId: 89184]
d1ubhl_ : (GLY386) (LYS454) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio vulgaris [TaxId: 881]
d1ic8a2 : (ASP111) (THR178) [view usage] : a.35.1.1 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |POU-specific domain |Hepatocyte nuclear factor 1a (LFB1/HNF1) |Human (Homo sapiens) [TaxId: 9606]
d1tm9a_ : (GLU57) (TYR133) [view usage] : a.225.1.1 |Hypothetical protein MG354 |Hypothetical protein MG354 |Hypothetical protein MG354 |Hypothetical protein MG354 |Mycoplasma genitalium [TaxId: 2097]
d8gpba_ : (ARG457) (GLN480) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1jjra_ : (GLU50) (PHE95) [view usage] : a.140.2.1 |LEM/SAP HeH motif |SAP domain |SAP domain |DNA binding C-terminal domain of ku70 |Human (Homo sapiens) [TaxId: 9606]
d3myrd_ : (PRO1390) (GLY1458) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Allochromatium vinosum [TaxId: 1049]
d1xg7b_ : (LEU177) (GLY241) [view usage] : a.96.1.6 |DNA-glycosylase |DNA-glycosylase |AgoG-like |Hypothetical protein PF0904 |Pyrococcus furiosus [TaxId: 2261]
d2auwb1 : (HIS90) (THR142) [view usage] : a.35.1.10 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |NE0471 C-terminal domain-like |Hypothetical protein NE0471 C-terminal domain |Nitrosomonas europaea [TaxId: 915]
d1e3oc2 : (LEU6) (ALA74) [view usage] : a.35.1.1 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |POU-specific domain |Oct-1 |Human (Homo sapiens) [TaxId: 9606]
d1ysea1 : (SER373) (LEU435) [view usage] : a.35.1.7 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |CUT domain |DNA-binding protein SATB1 |Human (Homo sapiens) [TaxId: 9606]
d2xzmo_ : (SER33) (GLY81) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1au7a2 : (MET6) (GLU73) [view usage] : a.35.1.1 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |POU-specific domain |Pit-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2ox6c_ : (ASN8) (LYS78) [view usage] : a.35.1.6 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |YdiL-like |Hypothetical protein SO3848 |Shewanella oneidensis [TaxId: 70863]
d2a98a_ : (ARG507) (SER545) [view usage] : d.143.1.3 |SAICAR synthase-like |SAICAR synthase-like |Inositol polyphosphate kinase (IPK) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3myrb_ : (PRO1390) (GLY1458) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Allochromatium vinosum [TaxId: 1049]
d1gyza_ : (ALA61) (GLN118) [view usage] : a.144.2.1 |PABP domain-like |Ribosomal protein L20 |Ribosomal protein L20 |Ribosomal protein L20 |Aquifex aeolicus [TaxId: 63363]
d2onda1 : (THR242) (GLY312) [view usage] : a.118.8.7 |alpha-alpha superhelix |TPR-like |HAT/Suf repeat |Cleavage stimulation factor 77 kDa subunit CSTF3 |Mouse (Mus musculus) [TaxId: 10090]
d2o38a1 : (PRO28) (ASP92) [view usage] : a.35.1.13 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |NE1354 |Hypothetical protein RPA3824 |Rhodopseudomonas palustris [TaxId: 1076]
d1xg7a_ : (LEU177) (GLY241) [view usage] : a.96.1.6 |DNA-glycosylase |DNA-glycosylase |AgoG-like |Hypothetical protein PF0904 |Pyrococcus furiosus [TaxId: 2261]
d1rzsa_ : (LYS3) (ALA47) [view usage] : a.35.1.2 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Phage repressors |cro p22 |Bacteriophage p22 [TaxId: 10754]
d2ox6d_ : (ASN8) (LYS78) [view usage] : a.35.1.6 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |YdiL-like |Hypothetical protein SO3848 |Shewanella oneidensis [TaxId: 70863]
d2ox6a1 : (ASN8) (LYS78) [view usage] : a.35.1.6 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |YdiL-like |Hypothetical protein SO3848 |Shewanella oneidensis [TaxId: 70863]
d3ayxa_ : (PRO412) (GLY494) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Hydrogenovibrio marinus [TaxId: 28885]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, a.118, e.18, c.37, c.87, a.96, d.143, c.52, a.4, a.39, a.35, a.14, a.144, d.260, g.37, a.140, a.225