Protein Concepts Dictionary

Tableau information

Concept source:  d3azlb_  amino acid (a.a.) range (ASN25)(GLY94)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: HHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASN25)   (THR30) H1
	   (THR30)   (GLY42) H2
	   (TYR51)   (GLN77) H3
	   (ALA83)   (GLY94) H4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                          
H2       56.0°   H2                   
H3      123.9°   91.4°   H3            
H4      -82.2°  -55.0°  117.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1p3ob_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d3aznb_ :    (ASN25)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3azmb_ :    (ASN25)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1p3gf_ :   (ASP224)  (GLY294)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d1p3ib_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d1p3af_ :   (ASP224)  (GLY294)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d3aznf_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1f66f_ :   (ASP224)  (GLY294)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |Mouse (Mus musculus) [TaxId: 10090]
 d1m1af_ :   (ASP224)  (GLY294)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d2z37a_ :   (TRP267)  (THR319)   [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Brassica juncea [TaxId: 3707]
 d3azjb_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4jjnf_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
 d1eqzd_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
 d1aoif_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d2yfwh_ :    (ASP24)   (ARG92)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Kluyveromyces lactis [TaxId: 284590]
 d2yfwd_ :    (ASP24)   (ARG92)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Kluyveromyces lactis [TaxId: 284590]
 d4jjnb_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
 d1hq3h_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
 d3azif_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ku7d_ :   (SER377)  (PHE436)   [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |Sigma70 (SigA, RpoD) |Thermus aquaticus [TaxId: 271]
 d3azib_ :    (ASN25)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1p3pf_ :   (ASP224)  (GLY294)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d1m18b_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d1p3bf_ :   (ASP224)  (GLY294)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d2z39a_ :   (TRP267)  (THR319)   [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Brassica juncea [TaxId: 3707]
 d1p3bb_ :    (ASN25)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d2hiod_ :    (ASN25)   (GLU94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
 d3azmf_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1id3b_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3l2fp1 :    (THR46)   (ASN74)   [view usage] : a.83.1.0 |Guanido kinase N-terminal domain |Guanido kinase N-terminal domain |automated matches |automated matches |Namalycastis sp. [TaxId: 243920]
 d1s32f_ :   (ASP224)  (GLY294)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d2cv5f_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |Human (Homo sapiens) [TaxId: 9606]
 d3azlf_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3r45b_ :    (ARG23)   (THR96)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |Human (Homo sapiens) [TaxId: 9606]
 d1p3of_ :   (ASP224)  (GLY294)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d1eqzh_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
 d1f66b_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |Mouse (Mus musculus) [TaxId: 10090]
 d1jdra_ :    (TYR16)   (ASP79)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Cytochrome c peroxidase, CCP |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3azlb_ :    (ASN25)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1kx4f_ :    (ASN25)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d1p3gb_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d1p34f_ :   (ASP224)  (GLY294)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d1kx3b_ :    (ASN25)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d3azjf_ :    (ASP24)   (GLY94)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2z39b_ :   (TRP267)  (THR319)   [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Brassica juncea [TaxId: 3707]
 d1p3ff_ :   (ASP224)  (GLY294)   [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |African clawed frog (Xenopus laevis) [TaxId: 8355]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  a.93,     d.2,     a.4,    a.83,    a.22