Protein Concepts Dictionary

Tableau information

Concept source:  d4ow1w_  amino acid (a.a.) range (ASP7)(GLY78)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: HHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP7)   (GLU13) H1
	   (LYS33)   (GLY41) H2
	   (SER50)   (GLU64) H3
	   (TRP70)   (GLY78) H4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                          
H2     -156.8°   H2                   
H3       94.4°   85.1°   H3            
H4      144.2°  -56.8° -105.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4ow1a_ :     (ASP7)   (GLY78)   [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d4cgea_ :   (TRP101)  (GLY169)   [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d2heka1 :   (GLY202)  (ILE277)   [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein aq_1910 |Aquifex aeolicus [TaxId: 63363]
 d4ow1x_ :     (ASP7)   (GLY78)   [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d4ow1t_ :     (ASP7)   (GLY78)   [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d1wpba_ :    (LYS61)  (ASP127)   [view usage] : a.233.1.1 |YfbU-like |YfbU-like |YfbU-like |Hypothetical protein YfbU |Escherichia coli [TaxId: 562]
 d4ow1b_ :     (ASP7)   (GLY78)   [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d4lr3a_ :    (LYS61)  (ASP127)   [view usage] : a.233.1.1 |YfbU-like |YfbU-like |YfbU-like |automated matches |Escherichia coli [TaxId: 562]
 d4ow1w_ :     (ASP7)   (GLY78)   [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d1wpbm_ :    (LYS61)  (ASP127)   [view usage] : a.233.1.1 |YfbU-like |YfbU-like |YfbU-like |Hypothetical protein YfbU |Escherichia coli [TaxId: 562]
 d4cged_ :   (ASP102)  (GLY169)   [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d4ow1u_ :     (ASP7)   (GLY78)   [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.211,     d.2,   a.233