Tableau information
Concept source: d1w5sa2 amino acid (a.a.) range (SER217)(SER291)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER217) (LEU230) H1
(PRO239) (TYR249) H2
(SER258) (GLY277) H3
(GLU283) (SER291) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 140.5° H2
H3 -42.8° 139.3° H3
H4 118.0° -22.6° 129.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1r71b_ : (GLU196) (LEU250) [view usage] : a.4.14.1 |DNA/RNA-binding 3-helical bundle |KorB DNA-binding domain-like |KorB DNA-binding domain-like |Transcriptional repressor protein KorB DNA-binding domain |Escherichia coli [TaxId: 562]
d1slya2 : (ASP522) (GLU577) [view usage] : d.2.1.6 |Lysozyme-like |Lysozyme-like |Bacterial muramidase, catalytic domain |70 kDa soluble lytic transglycosylase, SLT70 |Escherichia coli [TaxId: 562]
d153la_ : (TYR48) (ALA146) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |Lysozyme |Western graylag goose (Anser anser anser) [TaxId: 8844]
d1rp3g3 : (ASN3) (SER83) [view usage] : a.177.1.1 |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma factor sigma-28 (FliA) |Aquifex aeolicus [TaxId: 63363]
d1ou5a1 : (LYS299) (TRP352) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |tRNA CCA-adding enzyme, C-terminal domains |Human (Homo sapiens), mitochondrial [TaxId: 9606]
d1xxhb2 : (ASP179) (GLY242) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |gamma subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d1qsaa2 : (PRO523) (GLU577) [view usage] : d.2.1.6 |Lysozyme-like |Lysozyme-like |Bacterial muramidase, catalytic domain |70 kDa soluble lytic transglycosylase, SLT70 |Escherichia coli [TaxId: 562]
d2ht2a1 : (VAL152) (HIS234) [view usage] : f.20.1.1 |Clc chloride channel |Clc chloride channel |Clc chloride channel |Clc chloride channel |Escherichia coli [TaxId: 562]
d1r0ka1 : (PRO306) (SER385) [view usage] : a.69.3.1 |Left-handed superhelix |1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |Zymomonas mobilis [TaxId: 542]
d1lkvx_ : (VAL117) (LEU164) [view usage] : a.118.14.1 |alpha-alpha superhelix |FliG |FliG |FliG |Thermotoga maritima [TaxId: 2336]
d2ou3a1 : (SER2) (THR72) [view usage] : a.287.1.1 |TerB-like |TerB-like |COG3793-like |Tellurite resistance protein of COG3793 |Nostoc punctiforme pcc 73102 [TaxId: 63737]
d1ixsb2 : (THR169) (GLY239) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Holliday junction helicase RuvB |Thermus thermophilus [TaxId: 274]
d2ouwa1 : (ASP44) (MSE124) [view usage] : a.152.1.4 |AhpD-like |AhpD-like |TTHA0727-like |Hypothetical protein Rru_A0301 |Rhodospirillum rubrum [TaxId: 1085]
d3ri7a_ : (GLY238) (ARG339) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Pseudomonas mendocina [TaxId: 300]
d1ny5a2 : (ILE317) (VAL384) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Transcriptional activator sigm54 (NtrC1), C-terminal domain |Aquifex aeolicus [TaxId: 63363]
d4kk6a_ : (ILE356) (GLY440) [view usage] : f.20.1.1 |Clc chloride channel |Clc chloride channel |Clc chloride channel |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1nv8a_ : (ILE14) (GLY84) [view usage] : c.66.1.30 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N5-glutamine methyltransferase, HemK |N5-glutamine methyltransferase, HemK |Thermotoga maritima [TaxId: 2336]
d3umka_ : (ASP309) (ILE451) [view usage] : a.47.4.1 |STAT-like |CAPPD, an extracellular domain of amyloid beta A4 protein |CAPPD, an extracellular domain of amyloid beta A4 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4p7xa_ : (ASP202) (ILE270) [view usage] : b.82.2.0 |Double-stranded beta-helix |Clavaminate synthase-like |automated matches |automated matches |Rhizobium loti [TaxId: 266835]
d3m0ea_ : (ILE317) (VAL384) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |automated matches |Aquifex aeolicus [TaxId: 63363]
d3h4ma_ : (ASP342) (LYS416) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d3umha_ : (HIS313) (ILE451) [view usage] : a.47.4.1 |STAT-like |CAPPD, an extracellular domain of amyloid beta A4 protein |CAPPD, an extracellular domain of amyloid beta A4 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1sxjd2 : (ASP193) (GLY261) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication factor C2 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4cxad2 : (PRO160) (GLN260) [view usage] : a.74.1.1 |Cyclin-like |Cyclin-like |Cyclin |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1l7vc_ : (PRO89) (PRO150) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |ABC transporter involved in vitamin B12 uptake, BtuD |Escherichia coli [TaxId: 562]
d2di0a1 : (VAL11) (LEU62) [view usage] : a.5.2.4 |RuvA C-terminal domain-like |UBA-like |CUE domain |Activating signal cointegrator 1 complex subunit 2 |Human (Homo sapiens) [TaxId: 9606]
d1xg7b_ : (ARG25) (SER90) [view usage] : a.96.1.6 |DNA-glycosylase |DNA-glycosylase |AgoG-like |Hypothetical protein PF0904 |Pyrococcus furiosus [TaxId: 2261]
d2daga_ : (SER11) (ASN56) [view usage] : a.5.2.0 |RuvA C-terminal domain-like |UBA-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a9xa1 : (ALA420) (VAL479) [view usage] : a.92.1.1 |Carbamoyl phosphate synthetase, large subunit connection domain |Carbamoyl phosphate synthetase, large subunit connection domain |Carbamoyl phosphate synthetase, large subunit connection domain |Carbamoyl phosphate synthetase, large subunit connection domain |Escherichia coli [TaxId: 562]
d1sxjb2 : (SER167) (VAL228) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication factor C4 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vega_ : (SER29) (PHE77) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |NEDD8 ultimate buster-1 (Nub1) |Mouse (Mus musculus) [TaxId: 10090]
d3nmoa_ : (ILE356) (GLY440) [view usage] : f.20.1.1 |Clc chloride channel |Clc chloride channel |Clc chloride channel |automated matches |Escherichia coli [TaxId: 216592]
d4cjaa_ : (SER50) (LEU106) [view usage] : a.298.1.1 |Left-handed alpha-alpha superhelix |TAL effector-like |TAL (transcription activator-like) effector |BurrH |Burkholderia rhizoxinica [TaxId: 412963]
d4g9sa_ : (LYS49) (TYR147) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |automated matches |Atlantic salmon (Salmo salar) [TaxId: 8030]
d1is2a3 : (SER26) (MET106) [view usage] : e.6.1.2 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |acyl-CoA oxidase N-terminal domains |Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1jdbb1 : (ASP416) (GLU477) [view usage] : a.92.1.1 |Carbamoyl phosphate synthetase, large subunit connection domain |Carbamoyl phosphate synthetase, large subunit connection domain |Carbamoyl phosphate synthetase, large subunit connection domain |Carbamoyl phosphate synthetase, large subunit connection domain |Escherichia coli [TaxId: 562]
d1ojlc_ : (PRO320) (PRO390) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Salmonella typhimurium [TaxId: 602]
d3umia_ : (GLU310) (ILE451) [view usage] : a.47.4.1 |STAT-like |CAPPD, an extracellular domain of amyloid beta A4 protein |CAPPD, an extracellular domain of amyloid beta A4 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hh6a1 : (MSE1) (THR79) [view usage] : a.69.4.1 |Left-handed superhelix |BH3980-like |BH3980-like |Uncharacterized protein BH3980 |Bacillus halodurans [TaxId: 86665]
d1d1da2 : (LYS17) (ASP87) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |RSV capsid protein |Rous sarcoma virus [TaxId: 11886]
d2q0zx1 : (GLU57) (GLN144) [view usage] : a.289.1.1 |Sec63 N-terminal domain-like |Sec63 N-terminal domain-like |Sec63 N-terminal domain |Protein pro2281 |Human (Homo sapiens) [TaxId: 9606]
d1hqca2 : (THR169) (GLY239) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Holliday junction helicase RuvB |Thermus thermophilus [TaxId: 274]
d1xg7a_ : (ARG25) (SER90) [view usage] : a.96.1.6 |DNA-glycosylase |DNA-glycosylase |AgoG-like |Hypothetical protein PF0904 |Pyrococcus furiosus [TaxId: 2261]
d1xsza1 : (GLU66) (ASN143) [view usage] : a.118.3.1 |alpha-alpha superhelix |Sec7 domain |Sec7 domain |RalF, N-terminal domain |Legionella pneumophila [TaxId: 446]
d1onna1 : (CYS317) (LEU396) [view usage] : a.69.3.1 |Left-handed superhelix |1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |Escherichia coli [TaxId: 562]
d1g2ha_ : (SER5) (GLY58) [view usage] : a.4.1.12 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |FIS-like |Transcriptional regulator TyrR, C-terminal domain |Haemophilus influenzae [TaxId: 727]
d2o3lb_ : (MSE18) (TYR94) [view usage] : a.69.4.1 |Left-handed superhelix |BH3980-like |BH3980-like |Hypothetical protein BCE3448 |Bacillus cereus [TaxId: 1396]
d1veka_ : (ASN29) (ALA76) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |Ubiquitin isopeptidase T |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4nstd2 : (PRO160) (SER259) [view usage] : a.74.1.0 |Cyclin-like |Cyclin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1iqpa2 : (GLU172) (SER232) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication factor C |Pyrococcus furiosus [TaxId: 2261]
d2ouwb_ : (ASP44) (MSE124) [view usage] : a.152.1.4 |AhpD-like |AhpD-like |TTHA0727-like |Hypothetical protein Rru_A0301 |Rhodospirillum rubrum [TaxId: 1085]
d1w5sa2 : (SER217) (SER291) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |CDC6-like protein APE0152, N-terminal domain |Aeropyrum pernix [TaxId: 56636]
d2fug21 : (GLN8) (TYR67) [view usage] : c.47.1.21 |Thioredoxin fold |Thioredoxin-like |NQO2-like |NADH-quinone oxidoreductase chain 2, NQO2 |Thermus thermophilus [TaxId: 274]
d1otsb_ : (ILE356) (GLY440) [view usage] : f.20.1.1 |Clc chloride channel |Clc chloride channel |Clc chloride channel |Clc chloride channel |Escherichia coli [TaxId: 562]
d1se7a_ : (ASP3) (LEU67) [view usage] : a.237.1.1 |DNA polymerase III theta subunit-like |DNA polymerase III theta subunit-like |DNA polymerase III theta subunit-like |Homolog of theta (HOT) |Bacteriophage P1 [TaxId: 10678]
d1jqjc2 : (GLU143) (VAL206) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d1jvsb1 : (CYS316) (SER397) [view usage] : a.69.3.1 |Left-handed superhelix |1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |Escherichia coli [TaxId: 562]
d3bl2a_ : (TYR60) (ASN127) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |Bcl-2 homolog V-bcl-2 |Murid herpesvirus 4 [TaxId: 33708]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.298, b.82, a.118, c.66, f.20, c.37, c.47, e.6, d.2, a.96, a.25, a.152, a.4, f.1, a.74, a.73, a.289, a.69, a.177, a.47,
a.5, a.173, a.287, a.92, a.237