Tableau information
Concept source: d3v1kb_ amino acid (a.a.) range (MET150)(LYS210)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET150) (ALA161) H1
(SER164) (PHE175) H2
(GLU184) (ARG196) H3
(GLU199) (LYS210) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -162.7° H2
H3 -51.1° 128.2° H3
H4 -129.0° 57.3° 78.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1utra_ : (ILE4) (SER68) [view usage] : a.101.1.1 |Uteroglobin-like |Uteroglobin-like |Uteroglobin-like |Clara cell 17kDa protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3iwrb_ : (PRO94) (GLY170) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Oryza sativa [TaxId: 39947]
d1zkrb2 : (PRO78) (VAL128) [view usage] : a.101.1.1 |Uteroglobin-like |Uteroglobin-like |Uteroglobin-like |Allergen Fel d I-B chain |Cat (Felis catus) [TaxId: 9685]
d2idod_ : (GLN11) (GLN76) [view usage] : a.237.1.1 |DNA polymerase III theta subunit-like |DNA polymerase III theta subunit-like |DNA polymerase III theta subunit-like |Homolog of theta (HOT) |Bacteriophage P1 [TaxId: 10678]
d2puha_ : (MET150) (PRO212) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d1k9xa_ : (ASN360) (PRO442) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Thermostable carboxypeptidase 1 |Pyrococcus furiosus [TaxId: 2261]
d2h5nd_ : (SER14) (MET79) [view usage] : a.287.1.2 |TerB-like |TerB-like |PG1108-like |Hypothetical protein PG1108 |Porphyromonas gingivalis [TaxId: 837]
d1r4va_ : (THR87) (PHE171) [view usage] : a.22.1.4 |Histone-fold |Histone-fold |Bacterial histone-fold protein |Hypothetical protein Aq_328 |Aquifex aeolicus [TaxId: 63363]
d1svla_ : (GLY572) (GLY622) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Papillomavirus large T antigen helicase domain |Simian virus 40 [TaxId: 10633]
d1zkra1 : (PRO4) (SER67) [view usage] : a.101.1.1 |Uteroglobin-like |Uteroglobin-like |Uteroglobin-like |Allergen Fel d I-A chain |Cat (Felis catus) [TaxId: 9685]
d1zkra2 : (PRO78) (MET144) [view usage] : a.101.1.1 |Uteroglobin-like |Uteroglobin-like |Uteroglobin-like |Allergen Fel d I-B chain |Cat (Felis catus) [TaxId: 9685]
d2ezia_ : (GLU182) (GLU241) [view usage] : a.4.1.2 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Recombinase DNA-binding domain |Transposase |Bacteriophage Mu [TaxId: 10677]
d4eg1b2 : (ASP691) (PHE743) [view usage] : a.27.1.0 |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Trypanosoma brucei [TaxId: 999953]
d2gjua_ : (LYS72) (LEU121) [view usage] : d.159.1.5 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Phosphoesterase-related |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d2ijci_ : (LEU40) (THR78) [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Hypothetical protein PA0269 |Pseudomonas aeruginosa [TaxId: 287]
d1waca_ : (PHE546) (ASP624) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d4dwxa_ : (SER7) (GLY83) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Secale cereale [TaxId: 4550]
d1r2fa_ : (PHE162) (ASN248) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Salmonella typhimurium [TaxId: 90371]
d1mw7a_ : (PHE23) (SER79) [view usage] : e.39.1.1 |YebC-like |YebC-like |YebC-like |Hypothetical protein HP0162 |Helicobacter pylori [TaxId: 210]
d2idob_ : (SER10) (GLN76) [view usage] : a.237.1.1 |DNA polymerase III theta subunit-like |DNA polymerase III theta subunit-like |DNA polymerase III theta subunit-like |Homolog of theta (HOT) |Bacteriophage P1 [TaxId: 10678]
d3v1ka_ : (MET150) (ALA211) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d4kz1a_ : (GLU38) (HIS96) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella grahamii [TaxId: 634504]
d2bl0c_ : (SER89) (THR154) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Slime mold (Physarum polycephalum) [TaxId: 5791]
d4meia_ : (GLU87) (HIS145) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella tribocorum [TaxId: 382640]
d2yjma_ : (ARG52) (ILE106) [view usage] : a.184.1.1 |TorD-like |TorD-like |TorD-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d2h5nb_ : (SER14) (MET79) [view usage] : a.287.1.2 |TerB-like |TerB-like |PG1108-like |Hypothetical protein PG1108 |Porphyromonas gingivalis [TaxId: 837]
d1utga_ : (CYS3) (LYS65) [view usage] : a.101.1.1 |Uteroglobin-like |Uteroglobin-like |Uteroglobin-like |Uteroglobin |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1fsed_ : (THR13) (GLY70) [view usage] : a.4.6.2 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |GerE-like (LuxR/UhpA family of transcriptional regulators) |Germination protein GerE |Bacillus subtilis [TaxId: 1423]
d3byic_ : (PRO399) (SER472) [view usage] : a.116.1.0 |GTPase activation domain, GAP |GTPase activation domain, GAP |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1puoa1 : (PRO96) (SER159) [view usage] : a.101.1.1 |Uteroglobin-like |Uteroglobin-like |Uteroglobin-like |Allergen Fel d I-A chain |Cat (Felis catus) [TaxId: 9685]
d1hhsa_ : (PHE546) (ASP624) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d1n25a_ : (ILE573) (GLY622) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Papillomavirus large T antigen helicase domain |Simian virus 40 [TaxId: 10633]
d1p4wa_ : (PRO153) (SER209) [view usage] : a.4.6.2 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |GerE-like (LuxR/UhpA family of transcriptional regulators) |Transcriptional regulator RcsB |Erwinia amylovora [TaxId: 552]
d2h5na1 : (SER14) (MET79) [view usage] : a.287.1.2 |TerB-like |TerB-like |PG1108-like |Hypothetical protein PG1108 |Porphyromonas gingivalis [TaxId: 837]
d1puob2 : (PRO8) (MET74) [view usage] : a.101.1.1 |Uteroglobin-like |Uteroglobin-like |Uteroglobin-like |Allergen Fel d I-B chain |Cat (Felis catus) [TaxId: 9685]
d2vs0b_ : (SER7) (GLN86) [view usage] : a.25.3.0 |Ferritin-like |EsxAB dimer-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d2p0ta1 : (ALA24) (GLN79) [view usage] : a.290.1.1 |PSPTO4464-like |PSPTO4464-like |PSPTO4464-like |Uncharacterized protein PSPTO4464 |Pseudomonas syringae pv. tomato [TaxId: 323]
d1xsxa_ : (LYS4) (SER92) [view usage] : a.4.5.49 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Archaeal DNA-binding protein |Sso10a (SSO10449) |Sulfolobus solfataricus [TaxId: 2287]
d2og1a_ : (MET150) (ALA211) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d3v1kb_ : (MET150) (LYS210) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d1nnwa_ : (LYS72) (LEU121) [view usage] : d.159.1.5 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Phosphoesterase-related |Hypothetical protein PF1291 |Pyrococcus furiosus [TaxId: 2261]
d1nnwb_ : (LYS72) (LEU121) [view usage] : d.159.1.5 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Phosphoesterase-related |Hypothetical protein PF1291 |Pyrococcus furiosus [TaxId: 2261]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.69, d.159, d.92, c.37, d.2, a.25, d.17, a.152, a.4, a.39, a.116, a.27, a.184, a.22, e.39, a.290, a.287, a.237, a.101