Protein Concepts Dictionary

Tableau information

Concept source:  d2p7tc_  amino acid (a.a.) range (HIS25)(GLY123)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: HHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (HIS25)   (GLU51) H1
	   (ALA57)   (TYR62) H2
	   (ARG64)   (THR75) H3
	   (LEU86)  (GLY123) H4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                          
H2     -118.6°   H2                   
H3      132.0° -108.6°   H3            
H4     -168.8°   64.5°  -48.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4lbec_ :    (LEU24)  (GLY123)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |Potassium channel protein |Streptomyces lividans [TaxId: 1916]
 d2atkc_ :    (LEU24)  (GLY123)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |automated matches |Streptomyces lividans [TaxId: 1916]
 d2nljc_ :    (HIS25)  (GLY123)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |Potassium channel protein |Streptomyces lividans [TaxId: 1916]
 d2w0fc_ :    (ALA23)  (GLY123)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |automated matches |Streptomyces lividans [TaxId: 1916]
 d1v07a_ :     (TRP3)   (GLN44)   [view usage] : a.1.1.4 |Globin-like |Globin-like |Nerve tissue mini-hemoglobin (neural globin) |Nerve tissue mini-hemoglobin (neural globin) |Milky ribbon worm (Cerebratulus lacteus) [TaxId: 6221]
 d3or7c_ :    (HIS25)  (GLY123)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |automated matches |Streptomyces lividans [TaxId: 1916]
 d3fb5c_ :    (GLN25)  (PHE114)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |Potassium channel protein |Streptomyces lividans [TaxId: 1916]
 d1jvma_ :    (LEU24)  (GLU120)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |Potassium channel protein |Streptomyces coelicolor [TaxId: 1902]
 d3or6c_ :    (LEU24)  (GLY123)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |automated matches |Streptomyces lividans [TaxId: 1916]
 d1s5hc_ :    (LEU24)  (GLY123)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |Potassium channel protein |Streptomyces coelicolor [TaxId: 1902]
 d2id3a2 :    (ALA85)  (GLY149)   [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Putative transcriptional regulator SCO5951 |Streptomyces coelicolor [TaxId: 1902]
 d4f68a_ :     (TRP3)   (LEU44)   [view usage] : a.1.1.4 |Globin-like |Globin-like |Nerve tissue mini-hemoglobin (neural globin) |automated matches |Milky ribbon worm (Cerebratulus lacteus) [TaxId: 6221]
 d1rfzc_ :    (ARG58)  (VAL107)   [view usage] : a.195.1.1 |YutG-like |YutG-like |YutG-like |YutG homologue |Bacillus stearothermophilus [TaxId: 1422]
 d1m46a_ :    (THR39)   (LYS80)   [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Light Chain Mlc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1jvmb_ :    (LEU24)  (ARG122)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |Potassium channel protein |Streptomyces coelicolor [TaxId: 1902]
 d2mrca_ :    (SER22)   (LYS89)   [view usage] : a.21.1.0 |HMG-box |HMG-box |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
 d3stlc_ :    (HIS25)  (GLY123)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |automated matches |Streptomyces lividans [TaxId: 1916]
 d2p7tc_ :    (HIS25)  (GLY123)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |Potassium channel protein |Streptomyces lividans [TaxId: 1916]
 d4lcuc_ :    (LEU24)  (GLY123)   [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |Potassium channel protein |Streptomyces lividans [TaxId: 1916]
 d3qbja2 :   (ARG658)  (ALA692)   [view usage] : c.69.1.24 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |DPP6 catalytic domain-like |Dipeptidyl peptidase IV/CD26, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.69,     a.1,    a.39,    a.21,   a.121,    f.14,   a.195