Tableau information
Concept source: d1cfca_ amino acid (a.a.) range (GLU7)(MET76)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU7) (LEU18) H1
(THR28) (SER38) H2
(THR44) (VAL55) H3
(PHE65) (MET76) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 129.5° H2
H3 -96.3° 127.9° H3
H4 123.7° -47.2° 129.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4byfb_ : (THR6) (LYS78) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Human (Homo sapiens) [TaxId: 9606]
d4duqa_ : (SER3) (ASP88) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1l2ba1 : (SER144) (GLY218) [view usage] : a.156.1.2 |S13-like H2TH domain |S13-like H2TH domain |Middle domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
d3b9ja1 : (HIS99) (ALA164) [view usage] : a.56.1.1 |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |Xanthine oxidase, domain 2 |Cow (Bos taurus) [TaxId: 9913]
d1l1ta1 : (SER144) (GLY218) [view usage] : a.156.1.2 |S13-like H2TH domain |S13-like H2TH domain |Middle domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
d1t3qa1 : (ASN93) (THR155) [view usage] : a.56.1.1 |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |Quinoline 2-oxidoreductase small subunit QorS, C-domain |Pseudomonas putida [TaxId: 303]
d4dqqa2 : (ILE681) (SER742) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d1np8a_ : (PHE77) (ALA158) [view usage] : a.39.1.8 |EF Hand-like |EF-hand |Penta-EF-hand proteins |Calpain small (regulatory) subunit (domain VI) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1fiqa1 : (HIS99) (ALA164) [view usage] : a.56.1.1 |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |Xanthine oxidase, domain 2 |Cow (Bos taurus) [TaxId: 9913]
d1sd8a_ : (ARG41) (HIS88) [view usage] : c.47.1.12 |Thioredoxin fold |Thioredoxin-like |ArsC-like |automated matches |Escherichia coli [TaxId: 562]
d1npqa_ : (ALA25) (GLU88) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Chicken (Gallus gallus) [TaxId: 9031]
d1ggwa_ : (ASP5) (ARG66) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Cdc4p |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1n5wd1 : (SER88) (VAL159) [view usage] : a.56.1.1 |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain |Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]
d1s3da_ : (SER40) (HIS88) [view usage] : c.47.1.12 |Thioredoxin fold |Thioredoxin-like |ArsC-like |Arsenate reductase ArsC |Escherichia coli [TaxId: 562]
d3jr4a2 : (SER144) (GLY218) [view usage] : a.156.1.2 |S13-like H2TH domain |S13-like H2TH domain |Middle domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
d1y0vh1 : (THR5) (THR79) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1eh2a_ : (LYS10) (LYS83) [view usage] : a.39.1.6 |EF Hand-like |EF-hand |Eps15 homology domain (EH domain) |Eps15 |Human (Homo sapiens) [TaxId: 9606]
d1iq3a_ : (GLN20) (GLY91) [view usage] : a.39.1.6 |EF Hand-like |EF-hand |Eps15 homology domain (EH domain) |Pob1 |Human (Homo sapiens) [TaxId: 9606]
d1n5wa1 : (SER88) (ILE156) [view usage] : a.56.1.1 |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain |Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]
d3eubs2 : (HIS99) (ARG161) [view usage] : a.56.1.1 |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1f70a_ : (THR5) (MET76) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1n63a1 : (SER88) (ASN157) [view usage] : a.56.1.1 |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain |Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]
d1n2db_ : (LYS8) (ASN71) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Light Chain Mlc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3gfka_ : (SER38) (HIS86) [view usage] : c.47.1.12 |Thioredoxin fold |Thioredoxin-like |ArsC-like |automated matches |Bacillus subtilis [TaxId: 1423]
d1c07a_ : (PRO14) (ILE86) [view usage] : a.39.1.6 |EF Hand-like |EF-hand |Eps15 homology domain (EH domain) |Eps15 |Human (Homo sapiens) [TaxId: 9606]
d1tiza_ : (SER2) (LYS65) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin-related protein T21P5.17 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1s3ca_ : (SER40) (GLN87) [view usage] : c.47.1.12 |Thioredoxin fold |Thioredoxin-like |ArsC-like |automated matches |Escherichia coli [TaxId: 562]
d3nv6a_ : (THR192) (HIS274) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Novosphingobium aromaticivorans [TaxId: 279238]
d1jroa1 : (HIS89) (ALA150) [view usage] : a.56.1.1 |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |Xanthine dehydrogenase chain A, domain 2 |Rhodobacter capsulatus [TaxId: 1061]
d1xfuo1 : (GLU6) (LYS75) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Human (Homo sapiens) [TaxId: 9606]
d2doqb_ : (LEU18) (ARG92) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ocea2 : (ASN565) (LYS628) [view usage] : a.60.2.6 |SAM domain-like |RuvA domain 2-like |Tex HhH-containing domain-like |Transcriptional accessory factor Tex |Pseudomonas aeruginosa [TaxId: 287]
d1coka_ : (PRO5) (GLN64) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |C-terminal domain of p73 |Human (Homo sapiens) [TaxId: 9606]
d2gv5b_ : (LEU18) (ARG92) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2j5pa1 : (GLY1261) (GLY1309) [view usage] : a.4.5.67 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FtsK C-terminal domain-like |DNA translocase FtsK |Escherichia coli [TaxId: 562]
d1nuba1 : (TYR207) (GLY274) [view usage] : a.39.1.3 |EF Hand-like |EF-hand |Osteonectin |C-terminal (EC) domain of BM-40/SPARC/osteonectin |Human (Homo sapiens) [TaxId: 9606]
d2h42a_ : (ASN583) (SER652) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx |Human (Homo sapiens) [TaxId: 9606]
d2gqfa2 : (VAL267) (TRP328) [view usage] : e.74.1.1 |HI0933 insert domain-like |HI0933 insert domain-like |HI0933 insert domain-like |Hypothetical protein HI0933 |Haemophilus influenzae [TaxId: 727]
d1trfa_ : (MET18) (MET81) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Turkey (Meleagris gallopavo) [TaxId: 9103]
d3uzua_ : (PRO211) (ALA273) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d2y9ta_ : (SER548) (HIS608) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1r2ya1 : (SER144) (GLY218) [view usage] : a.156.1.2 |S13-like H2TH domain |S13-like H2TH domain |Middle domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
d2f5qa1 : (SER144) (GLY218) [view usage] : a.156.1.2 |S13-like H2TH domain |S13-like H2TH domain |Middle domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
d1l1za1 : (SER144) (GLY218) [view usage] : a.156.1.2 |S13-like H2TH domain |S13-like H2TH domain |Middle domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
d3hjea1 : (PRO459) (ASN541) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d1yt3a1 : (THR211) (THR284) [view usage] : a.60.8.3 |SAM domain-like |HRDC-like |RNase D C-terminal domains |Ribonuclease D |Escherichia coli [TaxId: 562]
d3fwce_ : (GLU19) (ARG92) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3jr5a2 : (SER144) (GLY218) [view usage] : a.156.1.0 |S13-like H2TH domain |S13-like H2TH domain |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d1dmoa_ : (GLU6) (MET76) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1jmxa1 : (GLN3) (GLY69) [view usage] : a.3.1.7 |Cytochrome c |Cytochrome c |Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 |Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 |Pseudomonas putida [TaxId: 303]
d1eiaa1 : (PRO162) (CYS218) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |EIAV capsid protein p26 |Equine infectious anemia virus [TaxId: 11665]
d4ovnb_ : (GLU7) (LYS78) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Human (Homo sapiens) [TaxId: 9606]
d2e18a_ : (THR188) (ARG243) [view usage] : c.26.2.0 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d1kfxs_ : (SER795) (ARG873) [view usage] : a.39.1.8 |EF Hand-like |EF-hand |Penta-EF-hand proteins |Calpain small (regulatory) subunit (domain VI) |Human (Homo sapiens) [TaxId: 9606]
d4dxeh_ : (ALA0) (ASN73) [view usage] : a.28.1.0 |Acyl carrier protein-like |ACP-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d4cisa2 : (GLU142) (GLY215) [view usage] : a.156.1.0 |S13-like H2TH domain |S13-like H2TH domain |automated matches |automated matches |Lactococcus lactis [TaxId: 1359]
d1qx7a_ : (GLU7) (THR79) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1xfxo1 : (THR5) (MSE72) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Human (Homo sapiens) [TaxId: 9606]
d1ee8a1 : (ALA131) (GLY205) [view usage] : a.156.1.2 |S13-like H2TH domain |S13-like H2TH domain |Middle domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Thermus thermophilus [TaxId: 274]
d1cfca_ : (GLU7) (MET76) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |African clawed frog (Xenopus laevis) [TaxId: 8355]
d3fwca_ : (LEU18) (ARG92) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1sa3a_ : (VAL133) (LEU189) [view usage] : c.52.1.23 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease MspI |Restriction endonuclease MspI |Moraxella sp. [TaxId: 479]
d2doqa_ : (LEU18) (ARG92) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1aj5a_ : (GLU98) (LEU169) [view usage] : a.39.1.8 |EF Hand-like |EF-hand |Penta-EF-hand proteins |Calpain small (regulatory) subunit (domain VI) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3futa_ : (PRO206) (GLU268) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, a.104, c.26, c.66, a.211, c.47, c.52, a.4, a.39, a.3, a.60, a.28, a.156, a.56, e.74