Tableau information
Concept source: d1y1xa_ amino acid (a.a.) range (SER61)(PHE138)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER61) (ASP73) H1
(THR81) (ASP103) H2
(SER112) (GLY123) H3
(SER127) (PHE138) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 133.7° H2
H3 19.2° 117.5° H3
H4 101.0° -121.3° 119.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4e04b1 : (ASN47) (GLU82) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 258594]
d1ijja2 : (GLU253) (ALA295) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Actin |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1rhza_ : (PRO342) (LEU433) [view usage] : f.41.1.1 |Preprotein translocase SecY subunit |Preprotein translocase SecY subunit |Preprotein translocase SecY subunit |Preprotein translocase SecY subunit |Methanococcus jannaschii [TaxId: 2190]
d1q0ab_ : (ASP44) (GLN132) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |Transcriptional regulator ZntR |Escherichia coli [TaxId: 562]
d2ethb_ : (LYS48) (ARG139) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Putative transcriptional regulator TM0816 |Thermotoga maritima [TaxId: 2336]
d4nr5a_ : (LYS1086) (VAL1129) [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3gxkd_ : (ASN78) (ASN187) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |automated matches |Atlantic cod (Gadus morhua) [TaxId: 8049]
d3gxka_ : (ASN78) (GLY188) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |automated matches |Atlantic cod (Gadus morhua) [TaxId: 8049]
d1ytzc_ : (THR3) (ASP65) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Chicken (Gallus gallus) [TaxId: 9031]
d1q0aa_ : (LEU45) (GLU131) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |Transcriptional regulator ZntR |Escherichia coli [TaxId: 562]
d3gxkb_ : (ASN78) (ASN187) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |automated matches |Atlantic cod (Gadus morhua) [TaxId: 8049]
d1p59a_ : (LEU82) (GLY150) [view usage] : a.96.1.1 |DNA-glycosylase |DNA-glycosylase |Endonuclease III |Endonuclease III |Escherichia coli [TaxId: 562]
d2d8na_ : (SER10) (ASP74) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1orna_ : (ARG84) (GLY150) [view usage] : a.96.1.1 |DNA-glycosylase |DNA-glycosylase |Endonuclease III |Endonuclease III |Escherichia coli [TaxId: 562]
d4gkfa_ : (THR17) (VAL86) [view usage] : a.70.2.0 |ATPD N-terminal domain-like |AF1862-like |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d4djca_ : (ASN-1) (ASP57) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Human (Homo sapiens) [TaxId: 9606]
d4gkfb_ : (ILE14) (VAL86) [view usage] : a.70.2.0 |ATPD N-terminal domain-like |AF1862-like |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d3l2da1 : (LYS26) (ASN74) [view usage] : a.83.1.0 |Guanido kinase N-terminal domain |Guanido kinase N-terminal domain |automated matches |automated matches |Namalycastis sp. [TaxId: 243920]
d1p2ha1 : (ASN3) (GLU48) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain |Shewanella frigidimarina [TaxId: 56812]
d2tn4a_ : (THR1) (ASP63) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.55, d.2, a.96, d.110, a.4, a.39, a.138, a.29, a.83, a.6, f.41, a.70