Tableau information
Concept source: d2whwa_ amino acid (a.a.) range (THR112)(PRO181)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR112) (ALA136) H1
(ALA149) (LEU161) H2
(PRO164) (ARG168) H3
(ARG168) (PRO181) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 136.7° H2
H3 -59.1° 149.6° H3
H4 -98.7° 115.7° -39.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3g1qa_ : (PHE142) (GLU205) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2kq5a_ : (GLN2) (GLU51) [view usage] : a.298.1.1 |Left-handed alpha-alpha superhelix |TAL effector-like |TAL (transcription activator-like) effector |PthA |Xanthomonas axonopodis pv. citri [TaxId: 92829]
d3l4da_ : (PHE141) (PHE213) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Leishmania infantum [TaxId: 5671]
d1iw7c_ : (SER225) (GLY259) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus thermophilus [TaxId: 274]
d2luca_ : (MET1) (ALA48) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2otab_ : (ARG11) (LEU69) [view usage] : a.284.1.1 |YejL-like |YejL-like |YejL-like |Hypothetical protein CPS2611 |Colwellia psychrerythraea [TaxId: 28229]
d1fc3c_ : (LYS141) (TYR197) [view usage] : a.4.6.3 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |Spo0A |Spo0A |Bacillus stearothermophilus [TaxId: 1422]
d1fc3a_ : (LYS141) (TYR197) [view usage] : a.4.6.3 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |Spo0A |Spo0A |Bacillus stearothermophilus [TaxId: 1422]
d1ofwa_ : (LYS240) (HIS288) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Nine-heme cytochrome c |Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]
d1gwsa_ : (GLY443) (HIS509) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |16-heme cytochrome c HmcA |Desulfovibrio vulgaris [TaxId: 881]
d1e6va1 : (PRO285) (TYR361) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Alpha chain |Methanopyrus kandleri [TaxId: 2320]
d1rrsa1 : (SER90) (GLY137) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |Catalytic domain of MutY |Bacillus stearothermophilus [TaxId: 1422]
d3brjd_ : (ASN6) (LEU67) [view usage] : a.285.1.1 |MtlR-like |MtlR-like |MtlR-like |Mannitol operon repressor MtlR |Vibrio parahaemolyticus [TaxId: 670]
d1r2ua_ : (ASP3) (MET47) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Rainbow trout (Oncorhynchus mykiss) [TaxId: 8022]
d2dbta_ : (THR238) (GLY285) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Streptomyces griseus [TaxId: 1911]
d2cjea_ : (PHE154) (LYS214) [view usage] : a.204.1.0 |all-alpha NTP pyrophosphatases |all-alpha NTP pyrophosphatases |automated matches |automated matches |Leishmania major [TaxId: 5664]
d19hca_ : (LYS240) (HIS288) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Nine-heme cytochrome c |Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]
d2j5id_ : (PRO193) (LEU248) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 294]
d1k7la_ : (ALA256) (MET325) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor alpha, PPAR-alpha |Human (Homo sapiens) [TaxId: 9606]
d1smpa2 : (SER159) (TYR246) [view usage] : d.92.1.6 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Serralysin-like metalloprotease, catalytic (N-terminal) domain |Metalloprotease |Serratia marcescens [TaxId: 615]
d4n1yc_ : (THR249) (ILE333) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Crassostrea gigas [TaxId: 29159]
d3nv6a_ : (GLU129) (MET185) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Novosphingobium aromaticivorans [TaxId: 279238]
d3mnpa_ : (VAL539) (SER623) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4bjka_ : (PHE142) (LEU208) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1e6yb1 : (MET2193) (GLY2260) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanosarcina barkeri [TaxId: 2208]
d3g0qa1 : (SER90) (GLY137) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |Catalytic domain of MutY |Bacillus stearothermophilus [TaxId: 1422]
d2qtia_ : (SER8) (LEU73) [view usage] : a.284.1.1 |YejL-like |YejL-like |YejL-like |Uncharacterized protein SO2176 |Shewanella oneidensis [TaxId: 70863]
d1hbmb1 : (MET196) (GLU262) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1rrqa1 : (SER90) (GLY137) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |Catalytic domain of MutY |Bacillus stearothermophilus [TaxId: 1422]
d4a5ga_ : (ASN132) (PHE173) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |automated matches |Radish (Raphanus sativus) [TaxId: 3726]
d1co0a_ : (GLN17) (ARG63) [view usage] : a.4.12.1 |DNA/RNA-binding 3-helical bundle |TrpR-like |Trp repressor, TrpR |Trp repressor, TrpR |Escherichia coli [TaxId: 562]
d4l4ca_ : (LEU127) (THR185) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-CAM |Pseudomonas putida [TaxId: 303]
d3fz4a_ : (ALA38) (LEU76) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d2ocea3 : (SER3) (GLY50) [view usage] : a.294.1.1 |Tex N-terminal region-like |Tex N-terminal region-like |Tex N-terminal region-like |Transcriptional accessory factor Tex |Pseudomonas aeruginosa [TaxId: 287]
d1m6na2 : (LYS572) (LEU666) [view usage] : a.172.1.1 |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Bacillus subtilis [TaxId: 1423]
d3brja1 : (SER8) (LEU67) [view usage] : a.285.1.1 |MtlR-like |MtlR-like |MtlR-like |Mannitol operon repressor MtlR |Vibrio parahaemolyticus [TaxId: 670]
d1yptb_ : (SER422) (GLY462) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Protein-tyrosine phosphatase YopH, catalytic domain |Yersinia enterocolitica [TaxId: 630]
d3qypb_ : (SER39) (SER85) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d2bwya2 : (GLN284) (PHE347) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |Escherichia coli [TaxId: 562]
d3ofsc_ : (ARG58) (LEU112) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d4bcra_ : (GLY262) (MET325) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor alpha, PPAR-alpha |Human (Homo sapiens) [TaxId: 9606]
d1e6yb2 : (LYS2115) (ALA2156) [view usage] : d.58.31.2 |Ferredoxin-like |Methyl-coenzyme M reductase subunits |Methyl-coenzyme M reductase alpha and beta chain N-terminal domain |Beta chain |Methanosarcina barkeri [TaxId: 2208]
d1e6ye1 : (ALA5194) (GLY5260) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanosarcina barkeri [TaxId: 2208]
d2otaa1 : (SER8) (VAL68) [view usage] : a.284.1.1 |YejL-like |YejL-like |YejL-like |Hypothetical protein CPS2611 |Colwellia psychrerythraea [TaxId: 28229]
d3sqgb2 : (VAL192) (GLY255) [view usage] : a.89.1.0 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |automated matches |automated matches |Uncultured archaeon [TaxId: 115547]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.298, a.104, d.58, c.108, d.92, c.14, c.45, a.93, c.23, c.47, d.2, d.127, a.96, a.123, a.4, a.39, a.138, a.204, a.294, a.89,
e.29, a.284, a.172, a.285