Tableau information
Concept source: d2j70a_ amino acid (a.a.) range (MET1)(ALA83)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET1) (ALA20) H1
(THR23) (GLN41) H2
(GLU45) (TYR59) H3
(ASP65) (ALA83) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -164.3° H2
H3 -57.4° 134.6° H3
H4 124.0° -49.0° 161.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4upga_ : (PRO122) (VAL198) [view usage] : a.39.1.8 |EF Hand-like |EF-hand |Penta-EF-hand proteins |Sorcin |Human (Homo sapiens) [TaxId: 9606]
d2p9le_ : (ASP40) (THR101) [view usage] : a.148.1.1 |Arp2/3 complex 21 kDa subunit ARPC3 |Arp2/3 complex 21 kDa subunit ARPC3 |Arp2/3 complex 21 kDa subunit ARPC3 |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1m9yc_ : (SER16) (LEU83) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |HIV-1 capsid protein |Human immunodeficiency virus type 1 [TaxId: 11676]
d3r66a_ : (GLY13) (GLU101) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza b virus [TaxId: 107412]
d1sxje1 : (TRP259) (VAL327) [view usage] : a.80.1.1 |post-AAA+ oligomerization domain-like |post-AAA+ oligomerization domain-like |DNA polymerase III clamp loader subunits, C-terminal domain |Replication factor C5 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ahma1 : (SER6) (CYS77) [view usage] : a.8.9.1 |immunoglobulin/albumin-binding domain-like |Coronavirus NSP7-like |Coronavirus NSP7-like |Nonstructural protein 7, NSP7 |SARS coronavirus [TaxId: 227859]
d1me5c_ : (ASP31) (ARG99) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
d1vbma_ : (ASP267) (ALA320) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Escherichia coli [TaxId: 562]
d2j6yb_ : (GLU8) (GLN85) [view usage] : a.186.1.2 |KaiA/RbsU domain |KaiA/RbsU domain |Phosphoserine phosphatase RsbU, N-terminal domain |automated matches |Bacillus subtilis [TaxId: 1423]
d1wu7b2 : (SER178) (THR232) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Histidyl-tRNA synthetase (HisRS) |Thermoplasma acidophilum [TaxId: 2303]
d4bhxa_ : (SER5) (LYS66) [view usage] : a.28.3.0 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gu9b_ : (ASP31) (ARG99) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
d3groa_ : (SER157) (ASN197) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2onga2 : (VAL276) (TRP374) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Mentha spicata [TaxId: 29719]
d1w53a_ : (ASP2) (TYR84) [view usage] : a.186.1.2 |KaiA/RbsU domain |KaiA/RbsU domain |Phosphoserine phosphatase RsbU, N-terminal domain |Phosphoserine phosphatase RsbU, N-terminal domain |Bacillus subtilis [TaxId: 1423]
d2wlvb_ : (SER15) (ILE68) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |automated matches |Human immunodeficiency virus type 2 (isolate d194) [TaxId: 11713]
d3v09a2 : (ARG197) (HIS267) [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1u77a_ : (VAL272) (THR380) [view usage] : f.44.1.1 |Ammonium transporter |Ammonium transporter |Ammonium transporter |Ammonium transporter AmtB |Escherichia coli [TaxId: 562]
d1szha_ : (ASP99) (GLN157) [view usage] : a.226.1.1 |Her-1 |Her-1 |Her-1 |Her-1 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2b2fa_ : (ILE260) (ALA366) [view usage] : f.44.1.0 |Ammonium transporter |Ammonium transporter |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1jr3a1 : (ASP245) (GLY303) [view usage] : a.80.1.1 |post-AAA+ oligomerization domain-like |post-AAA+ oligomerization domain-like |DNA polymerase III clamp loader subunits, C-terminal domain |gamma subunit |Escherichia coli [TaxId: 562]
d2ahmb_ : (LYS7) (GLU78) [view usage] : a.8.9.1 |immunoglobulin/albumin-binding domain-like |Coronavirus NSP7-like |Coronavirus NSP7-like |automated matches |SARS coronavirus [TaxId: 227859]
d1rj9a1 : (ASN27) (GLY89) [view usage] : a.24.13.1 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |Domain of the SRP/SRP receptor G-proteins |Signal recognition particle receptor, FtsY |Thermus aquaticus [TaxId: 271]
d1sxjd1 : (PRO264) (GLN321) [view usage] : a.80.1.1 |post-AAA+ oligomerization domain-like |post-AAA+ oligomerization domain-like |DNA polymerase III clamp loader subunits, C-terminal domain |Replication factor C2 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1m9xc_ : (SER16) (LEU83) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |HIV-1 capsid protein |Human immunodeficiency virus type 1 [TaxId: 11676]
d1em9a_ : (GLU15) (ASP87) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |RSV capsid protein |Rous sarcoma virus [TaxId: 11886]
d2j6yc_ : (PHE3) (ALA83) [view usage] : a.186.1.2 |KaiA/RbsU domain |KaiA/RbsU domain |Phosphoserine phosphatase RsbU, N-terminal domain |automated matches |Bacillus subtilis [TaxId: 1423]
d1gjya_ : (ASP121) (VAL198) [view usage] : a.39.1.8 |EF Hand-like |EF-hand |Penta-EF-hand proteins |Sorcin |Chinese hamster (Cricetulus griseus) [TaxId: 10029]
d1qrja2 : (MET17) (GLY86) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |HTLV-I capsid protein |Human T-cell leukemia virus type 1 [TaxId: 11908]
d1me5a_ : (GLN34) (ARG99) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
d2j6ya_ : (PHE3) (GLN85) [view usage] : a.186.1.2 |KaiA/RbsU domain |KaiA/RbsU domain |Phosphoserine phosphatase RsbU, N-terminal domain |automated matches |Bacillus subtilis [TaxId: 1423]
d2cnwd1 : (ASN27) (GLY89) [view usage] : a.24.13.0 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |automated matches |automated matches |Thermus aquaticus [TaxId: 271]
d2j6yd_ : (VAL6) (GLN85) [view usage] : a.186.1.2 |KaiA/RbsU domain |KaiA/RbsU domain |Phosphoserine phosphatase RsbU, N-terminal domain |automated matches |Bacillus subtilis [TaxId: 1423]
d3ub0f_ : (THR4) (GLU77) [view usage] : a.8.9.0 |immunoglobulin/albumin-binding domain-like |Coronavirus NSP7-like |automated matches |automated matches |Feline infectious peritonitis virus [TaxId: 33734]
d1wu7a2 : (PRO180) (GLY233) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Histidyl-tRNA synthetase (HisRS) |Thermoplasma acidophilum [TaxId: 2303]
d1xxha1 : (PHE215) (ARG277) [view usage] : a.80.1.1 |post-AAA+ oligomerization domain-like |post-AAA+ oligomerization domain-like |DNA polymerase III clamp loader subunits, C-terminal domain |delta subunit |Escherichia coli [TaxId: 562]
d2j70a_ : (MET1) (ALA83) [view usage] : a.186.1.2 |KaiA/RbsU domain |KaiA/RbsU domain |Phosphoserine phosphatase RsbU, N-terminal domain |automated matches |Bacillus subtilis [TaxId: 1423]
d1kxpd3 : (CYS407) (ILE473) [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Vitamin D binding protein |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, c.26, a.128, d.104, a.126, a.152, a.39, a.73, a.24, a.28, a.80, a.8, a.186, f.44, a.16, a.226, a.148