Tableau information
Concept source: d3hu2a3 amino acid (a.a.) range (ASP373)(ASP434)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP373) (MET388) H1
(GLU397) (THR403) H2
(GLY408) (MET427) H3
(ASP431) (ASP434) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 129.1° H2
H3 -42.9° 121.5° H3
H4 74.1° -106.3° 115.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2qi9c_ : (PRO89) (GLY152) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |ABC transporter involved in vitamin B12 uptake, BtuD |Escherichia coli [TaxId: 562]
d1frfl_ : (ASP137) (THR244) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio fructosovorans [TaxId: 878]
d153la_ : (ALA146) (GLY184) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |Lysozyme |Western graylag goose (Anser anser anser) [TaxId: 8844]
d1wvua_ : (ASN158) (TRP228) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Streptomyces griseus [TaxId: 1911]
d1djgb1 : (PHE162) (ALA222) [view usage] : a.39.1.7 |EF Hand-like |EF-hand |EF-hand modules in multidomain proteins |Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ty4b_ : (GLU75) (VAL141) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |Apoptosis regulator ced-9 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1or7c_ : (GLN2) (GLU66) [view usage] : a.180.1.1 |N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |Escherichia coli [TaxId: 562]
d3nmaa_ : (VAL427) (ALA474) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus - type c [TaxId: 12116]
d2m34a_ : (THR15) (SER71) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2isga_ : (SER259) (LYS320) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |automated matches |Clostridium botulinum [TaxId: 1491]
d4icgc_ : (LYS8) (PHE70) [view usage] : a.23.5.1 |Open three-helical up-and-down bundle |Hemolysin expression modulating protein HHA |Hemolysin expression modulating protein HHA |automated matches |Salmonella enterica [TaxId: 990282]
d2cwqa1 : (ASP53) (LEU117) [view usage] : a.152.1.4 |AhpD-like |AhpD-like |TTHA0727-like |Hypothetical protein TTHA0727 |Thermus thermophilus [TaxId: 274]
d3j38r_ : (THR6) (ASP82) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1oipa1 : (LEU28) (ASP86) [view usage] : a.5.3.1 |RuvA C-terminal domain-like |CRAL/TRIO N-terminal domain |CRAL/TRIO N-terminal domain |Alpha-tocopherol transfer protein |Human (Homo sapiens) [TaxId: 9606]
d2rdxa1 : (GLY64) (GLY126) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Roseovarius nubinhibens [TaxId: 89187]
d2dbta_ : (ASN161) (TRP228) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Streptomyces griseus [TaxId: 1911]
d1ddxa1 : (ASN537) (VAL572) [view usage] : a.93.1.2 |Heme-dependent peroxidases |Heme-dependent peroxidases |Myeloperoxidase-like |Prostaglandin H2 synthase |Mouse (Mus musculus) [TaxId: 10090]
d1c52a_ : (ASP3) (LEU51) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c552 |Thermus thermophilus [TaxId: 274]
d1sana_ : (THR9) (GLY67) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Antennapedia Homeodomain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3klva_ : (GLN421) (HIS476) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus - type c [TaxId: 12116]
d1b4ua_ : (TYR79) (GLY125) [view usage] : a.88.1.1 |LigA subunit of an aromatic-ring-opening dioxygenase LigAB |LigA subunit of an aromatic-ring-opening dioxygenase LigAB |LigA subunit of an aromatic-ring-opening dioxygenase LigAB |LigA subunit of an aromatic-ring-opening dioxygenase LigAB |Sphingomonas paucimobilis, formerly Pseudomonas paucimobilis [TaxId: 13689]
d3j6vj_ : (ARG4) (ILE65) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d1u09a_ : (GLN421) (HIS476) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus [TaxId: 12110]
d2cjla_ : (ASN79) (TRP149) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d1hdpa_ : (VAL12) (SER63) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Oct-2 POU Homeodomain |Human (Homo sapiens) [TaxId: 9606]
d2k5sa_ : (LYS3) (HIS65) [view usage] : a.23.5.1 |Open three-helical up-and-down bundle |Hemolysin expression modulating protein HHA |Hemolysin expression modulating protein HHA |automated matches |Yersinia pestis [TaxId: 632]
d1jw2a_ : (THR7) (ILE71) [view usage] : a.23.5.1 |Open three-helical up-and-down bundle |Hemolysin expression modulating protein HHA |Hemolysin expression modulating protein HHA |Hemolysin expression modulating protein HHA |Escherichia coli [TaxId: 562]
d2cwqc_ : (ASP53) (LEU117) [view usage] : a.152.1.4 |AhpD-like |AhpD-like |TTHA0727-like |Hypothetical protein TTHA0727 |Thermus thermophilus [TaxId: 274]
d3q45a1 : (SER58) (GLY123) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Cytophaga hutchinsonii [TaxId: 269798]
d2c52a_ : (SER7) (GLN56) [view usage] : a.153.1.1 |Nuclear receptor coactivator interlocking domain |Nuclear receptor coactivator interlocking domain |Nuclear receptor coactivator interlocking domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2p1pa2 : (PHE99) (GLU160) [view usage] : a.157.1.0 |Skp1 dimerisation domain-like |Skp1 dimerisation domain-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1rj1a_ : (ASN2) (LYS67) [view usage] : a.29.6.1 |Bromodomain-like |Plant invertase/pectin methylesterase inhibitor |Plant invertase/pectin methylesterase inhibitor |Invertase inhibitor |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d4icgd_ : (LYS8) (PHE70) [view usage] : a.23.5.1 |Open three-helical up-and-down bundle |Hemolysin expression modulating protein HHA |Hemolysin expression modulating protein HHA |automated matches |Salmonella enterica [TaxId: 990282]
d1kqqa_ : (GLU7) (LYS75) [view usage] : a.4.3.1 |DNA/RNA-binding 3-helical bundle |ARID-like |ARID domain |DNA-binding domain from the dead ringer protein |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3zq7a_ : (THR52) (ILE94) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2cwqb_ : (ASP53) (LEU117) [view usage] : a.152.1.4 |AhpD-like |AhpD-like |TTHA0727-like |Hypothetical protein TTHA0727 |Thermus thermophilus [TaxId: 274]
d3knaa_ : (THR419) (GLU474) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus - type c [TaxId: 12116]
d3curh_ : (PRO138) (THR244) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d1or7f_ : (GLN2) (GLU64) [view usage] : a.180.1.1 |N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |Escherichia coli [TaxId: 562]
d3w67c1 : (GLY27) (ASP86) [view usage] : a.5.3.0 |RuvA C-terminal domain-like |CRAL/TRIO N-terminal domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2d7sa1 : (GLN421) (GLU474) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus [TaxId: 12110]
d2kk0a_ : (LYS24) (LYS86) [view usage] : a.4.3.1 |DNA/RNA-binding 3-helical bundle |ARID-like |ARID domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1efub3 : (THR4) (ASN54) [view usage] : a.5.2.2 |RuvA C-terminal domain-like |UBA-like |TS-N domain |Elongation factor Ts (EF-Ts), N-terminal domain |Escherichia coli [TaxId: 562]
d1opca_ : (SER181) (GLN223) [view usage] : a.4.6.1 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |PhoB-like |OmpR |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, i.1, d.92, a.93, e.18, c.37, d.2, a.152, a.4, a.39, a.3, a.29, f.1, a.23, d.54, a.157, a.5, a.153, a.180, a.88